LOC117595733 (LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692)


Basic Information

Item Value
gene id LOC117595733
gene name LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16791402 ~ 16793698 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380813
GACAGGAAATACTGGATGGTACTGGTGTGCTGTAGAGATAAGTGGACCAGACGTTAAAGAATACCTTTATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGTGGTGAGGAAGGAGGCAGTGTCACAGTCCAGTGTCTCTACAGCGCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTCAAAGATG
>XM_034297723.1
GTGTACCATGTGTCTGCATGGCAAGGTATGGAAAGATGTCTgttcctgttatagcagctagaaaaaCTTGTTCCTTCATCatcctctcctcttcttctctctgttgaagttaataagacaaaaagagtCACAAAGTTAAGGCAGGCTGTGGTTTTAGATGACATCGTAATGTTAGCAGGAAGAGGAACTGCTTGAGCTGCTACAGACACAGTAACAACTTCACACAGAAGCAGGACTCAAGAAAACCTCACAATTTTTTCAACATCAGAACAAGTTTAACATGagctgctttttcatttttattctcatcATTTCATGTGCTGTCTGTCAGGCATCGAGGGAGTTTAGTATTAAAACTGGAGCATCTGTCACTATCCCATGTCGTTATGATAGGAAATATATACAACATAAGAAATACTGGTGCTATGGAGAAACATTCAATTTCTGCACAGTTCAGGCGTATGCCAATAATACAAAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTGACAATGAATAATCTCCAGACAGGAAATACTGGATGGTACTGGTGTGCTGTAGAGATAAGTGGACCAGACGTTAAAGAATACCTTTATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGTGGTGAGGAAGGAGGCAGTGTCACAGTCCAGTGTCTCTACAGCGCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTCAAAGATGGATGCTGCAACACATTTAGGAAGACTGCCACatcccagaattcagcagtgaacATCAGTGATGATGGGAGAAGATCCTTCAGTGTGCAGATGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTTCTGTTCACATCAGTGTCCATGATCCACCTCCAGttGTGACTACAGCAGTGACTACAACAGTGACTACAGCAGTGACTACAACCACTCACCATGTCAGTACTTACACATCTGTCTCGAAGCACGATTCAGCAGCATCTGTGACTGCAGTTTCTAGCAGTCATCAAACCATGTGa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380813 False 209 lncRNA 0.46 2 16792128 16792438
XM_034297723.1 True 1078 mRNA 0.43 6 16791402 16793698

Neighbor

gene id symbol gene type direction distance location
LOC117599971 LOC108280611 coding upstream 35902 16750183 ~ 16755500 (+)
LOC113533485 LOC108280611,LOC108261562,LOC108280616,LOC108261605 coding upstream 50799 16718816 ~ 16740603 (+)
LOC113533288 dad1,LOC103040403,LOC107687594,LOC107726313 coding upstream 74195 16714399 ~ 16717207 (+)
tgm1l1 LOC108280800 coding upstream 85079 16683656 ~ 16706323 (+)
LOC113533121 kcnj10,LOC108280182 coding upstream 161930 16620683 ~ 16629472 (+)
LOC117599974 LOC108261605 coding downstream 5088 16798786 ~ 16805263 (+)
LOC117599976 LOC108280611,LOC108280616,LOC108261605 coding downstream 27037 16820735 ~ 16824608 (+)
LOC117599975 LOC108280611,LOC108261605 coding downstream 36404 16830102 ~ 16845645 (+)
LOC117595734 LOC108261605,LOC108280611 coding downstream 67125 16860823 ~ 16868946 (+)
LOC113546333 NA coding downstream 80184 16873882 ~ 16882758 (+)
G321585 NA non-coding upstream 1795 16789186 ~ 16789607 (+)
G321589 NA non-coding upstream 18953 16759842 ~ 16772449 (+)
G321584 NA non-coding upstream 36172 16745776 ~ 16755230 (+)
G321563 NA non-coding upstream 87586 16666430 ~ 16703816 (+)
G321454 NA non-coding upstream 190809 16594197 ~ 16600593 (+)
G321602 NA non-coding downstream 99115 16892813 ~ 16893024 (+)
G321704 LOC108410862 non-coding downstream 165047 16958745 ~ 16960734 (+)
LOC117599934 NA non-coding downstream 731873 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 837516 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 928240 17721938 ~ 17786701 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 2434 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 43062 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 659038 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 671369 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 680313 16100533 ~ 16111089 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 45070 16838768 ~ 16859682 (+)
fuz fuz other downstream 685136 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 776951 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 795374 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 1432223 18225921 ~ 18227233 (+)

Expression


Co-expression Network