G321591


Basic Information

Item Value
gene id G321591
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16792714 ~ 16859578 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380827
CAGTGACTACAACAGTGACTACAGCAGTGACTACAACCACTCACCATGTCAGTACTTACACATCTGTCTCGAAGCACAATTCAGCATCTGTGACTGCAGTTTCTAGCAGTCATCAAACCATATCTGTCTCGAAGCACGATTCAGCAGCATCTGTGACTGCAGTTTCTAGCAGTGATGAAACCATTGGGGGTGAGCCCGTGATCCACTGGTACCTGGTGGCCCTTATTTTACTACTGGTGATACTGGTCATCATCATCTGCATGCTaagaaagaaatgcaAGAATCAAATCAGGACCAGAGAGAGGAGCAATGACACCACTGTTCACACAcagCCCACTTTTCCAGCTGAAGACTCCattatatacagcactgtggctGTTTCTAAGCCAAAATCTTCAGCATCAAAAGATAATGAGCAGGACGTGACCTACAGCATTGTAAACATTGCTTCCAAGAATAAATCTGTGTCTCCAAATAATGTTGATGTTGAGAACATCTACAGCAACGTGGTGTGCCAGTAAGAGAtgtgtatataagtatataaAGATTGATGTCCTGTTTGGCTGGAAGGAAACTGTGGGTGGTGCCTCAGGGATCTCTACTGGGTCTCATGTTCATCCTCAGCATTATGAACAAACCCAATCAGGACAAGGACAACATACCTCACACTCATACCACTGACTTACATCATAGTCACATGACCCTCAGTCATTCAGAAAATACCAGTTTCCTTACTGTAGCTGCCACATGCTAACTGCTAAAGCTAACTCAATACAAGTCCTACTACACCAGCTATCATCATTTCCATCCACACGGCACACACCAGTCCAGCCCTTAAATACAGACATGCGTATGCAACATAACACACTGAGGAACTTACACAACTGGATGAAtataaatgtaagaaaaaaaaaaaacaattggtGATTGCAAATAAAAAGAGCAATTCCAGCATCTAGTATATCTATGTGTTCTTATATATTTCTCACATTTGCATATAAATACAAGGACAGACAAAGTGGTACATTTACATGTCTAATAAATATCTGAAGCATTCAGGGTTATTGTCG

Function

NR:

description
zinc finger protein 292-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380827 True 1070 lncRNA 0.41 11 16792714 16859578

Neighbor

gene id symbol gene type direction distance location
LOC117599971 LOC108280611 coding upstream 37214 16750183 ~ 16755500 (+)
LOC113533485 LOC108280611,LOC108261562,LOC108280616,LOC108261605 coding upstream 52111 16718816 ~ 16740603 (+)
LOC113533288 dad1,LOC103040403,LOC107687594,LOC107726313 coding upstream 75507 16714399 ~ 16717207 (+)
tgm1l1 LOC108280800 coding upstream 86391 16683656 ~ 16706323 (+)
LOC113533121 kcnj10,LOC108280182 coding upstream 163242 16620683 ~ 16629472 (+)
LOC117595734 LOC108261605,LOC108280611 coding downstream 1245 16860823 ~ 16868946 (+)
LOC113546333 NA coding downstream 14304 16873882 ~ 16882758 (+)
them6 LOC108280811,LOC107757799,LOC108410858,LOC107600265,LOC107655852,LOC107599286,LOC107663514 coding downstream 71730 16931308 ~ 16937488 (+)
si:ch73-52e5.2 LOC108280810 coding downstream 76227 16935805 ~ 16938674 (+)
ftr67 LOC108280685 coding downstream 82264 16941842 ~ 16947346 (+)
G321582 NA non-coding upstream 617 16750160 ~ 16792097 (+)
G321585 NA non-coding upstream 3107 16789186 ~ 16789607 (+)
G321589 NA non-coding upstream 20265 16759842 ~ 16772449 (+)
G321584 NA non-coding upstream 37484 16745776 ~ 16755230 (+)
G321563 NA non-coding upstream 88898 16666430 ~ 16703816 (+)
G321602 NA non-coding downstream 33235 16892813 ~ 16893024 (+)
G321704 LOC108410862 non-coding downstream 99167 16958745 ~ 16960734 (+)
LOC117599934 NA non-coding downstream 665993 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 771636 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 862360 17721938 ~ 17786701 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 3746 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 44374 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 660350 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 672681 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 681625 16100533 ~ 16111089 (+)
fuz fuz other downstream 619256 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 711071 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 729494 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 1366343 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 1534445 18394023 ~ 18430022 (+)

Expression


Co-expression Network