G321602


Basic Information

Item Value
gene id G321602
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16892813 ~ 16893024 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380843
TTATGTAGGAAACTATGGCGTTTTCAAACAGTGACCTGTGTTCCATGAGCAATGCCCCGTGGTATCTCTTTGAGTCCGATGGAGCCGCACTCCACTGTCAGGCTGTAGCACCGGCAGCCAGAGGGACATCCGATGCAGGGCATGGGTAATAGGACCAGAACCACCACCAGAAGCGAGAGACAATGGAGGAGGAACGCCATCTCAGAAGAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380843 True 212 lncRNA 0.54 1 16892813 16893024

Neighbor

gene id symbol gene type direction distance location
LOC113546333 NA coding upstream 10055 16873882 ~ 16882758 (+)
LOC117595734 LOC108261605,LOC108280611 coding upstream 23867 16860823 ~ 16868946 (+)
LOC117599975 LOC108280611,LOC108261605 coding upstream 47168 16830102 ~ 16845645 (+)
LOC117599976 LOC108280611,LOC108280616,LOC108261605 coding upstream 68205 16820735 ~ 16824608 (+)
LOC117599974 LOC108261605 coding upstream 87550 16798786 ~ 16805263 (+)
them6 LOC108280811,LOC107757799,LOC108410858,LOC107600265,LOC107655852,LOC107599286,LOC107663514 coding downstream 38284 16931308 ~ 16937488 (+)
si:ch73-52e5.2 LOC108280810 coding downstream 42781 16935805 ~ 16938674 (+)
ftr67 LOC108280685 coding downstream 48818 16941842 ~ 16947346 (+)
LOC117599965 LOC108280683 coding downstream 59953 16952977 ~ 16956560 (+)
ghrhra LOC108280336,LOC108433063 coding downstream 82899 16975923 ~ 16991112 (+)
G321591 NA non-coding upstream 33235 16792714 ~ 16859578 (+)
G321582 NA non-coding upstream 100716 16750160 ~ 16792097 (+)
G321585 NA non-coding upstream 103206 16789186 ~ 16789607 (+)
G321589 NA non-coding upstream 120364 16759842 ~ 16772449 (+)
G321584 NA non-coding upstream 137583 16745776 ~ 16755230 (+)
G321704 LOC108410862 non-coding downstream 65721 16958745 ~ 16960734 (+)
LOC117599934 NA non-coding downstream 632547 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 738190 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 828914 17721938 ~ 17786701 (+)
G322233 LOC108280496 non-coding downstream 961524 17854548 ~ 17855258 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 33131 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 99115 16791402 ~ 16793698 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 103845 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 144473 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 760449 16131335 ~ 16132364 (+)
fuz fuz other downstream 585810 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 677625 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 696048 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 1332897 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 1500999 18394023 ~ 18430022 (+)

Expression


Co-expression Network