G321704 (LOC108410862)


Basic Information

Item Value
gene id G321704
gene name LOC108410862
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16958745 ~ 16960734 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380963
attaataaatttataattaatcataCTGAATTACTTTAACGGTAATAAATAattcttaaattaaaataatgccTTCATTTGTTCCCTAAAGCAGTAACAATCTGAGTGCGTACAGGTTTGACGTCGAGTATGATGGAGGACTTGGCGATGAGGGCGGGTTTTTTAGCCTTCTTCGCGGCGTACTCCTGCACCCTCTGTGCTTTAATGCGCTCGGCCTCTTCGTCTTCCTCGTCACTGCCAAACAGGTCGATGTCGTcgtcctcttcttcttcttttaccaCCACTTTGGGTTTCGGAGCTGGAGCAGCCTGTGAAGCGGCCGCTGCTTTGGGAGCCTGACTCggagtcttctccagcacagaTAATCTGCTCTCTAGTTTGGACAGCATGGCCCTCAGGTCATCCACCACTGTGGAGGTTCTTGTTGTCCAGCTCCAGGCTCTTTACTCGTGAGACCAGCTCGCTCTGATCTTCTGATTTGCTGGCATTCTGACTCTACAGGCAAGAACAAAACAGAGACGATTAGAGGCTCTAACTGCCAGAAGGAACAAAACAAGAGTGCAAACATTTTCCTGACACACTGCATTAATGCCAAGCTCTGAGTGTGTGCACTGGAATACACACCATGCAAGTGGGCAAATTAAAACAGCATTCCAAGTGGAGCACAAAGCAGTGTCAAAACCTCTGAGCGTGCTTCTCAATGTGTGTGGTTTACTTTCAGTTCGCTTTTATGTACTTGTTTTTCCAATTTCCATTTGTTCAACTCCAAATGACCTGAACATCATGTCACAGAAATACCGATGGGAAGTGTGAGAAACGGAGGCGGGTACATAACGTTCGGAATAATCGGCTGAGGTTGGAGTTGACGCCTTCCTTGGCAGAGCAGTGAAAGAAAAGTAGAGGGTGTAGAATAACATCGACAGCTGGCTCATTTCCATACACTCTGCCTGGATCACTATTATTTACTTACTGCACAGGAGGAATGAGATTCCTTCACAGTAAATACAGAATGCAGATTAGATAACAGAACAATGGCGAAGTGGGATCTTTCGGTACGCAGATACAGAttttatgtgaggaataaaacacatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380963 True 1093 lncRNA 0.45 3 16958745 16960734

Neighbor

gene id symbol gene type direction distance location
LOC117599965 LOC108280683 coding upstream 2185 16952977 ~ 16956560 (+)
ftr67 LOC108280685 coding upstream 11399 16941842 ~ 16947346 (+)
si:ch73-52e5.2 LOC108280810 coding upstream 20071 16935805 ~ 16938674 (+)
them6 LOC108280811,LOC107757799,LOC108410858,LOC107600265,LOC107655852,LOC107599286,LOC107663514 coding upstream 21257 16931308 ~ 16937488 (+)
LOC113546333 NA coding upstream 75987 16873882 ~ 16882758 (+)
ghrhra LOC108280336,LOC108433063 coding downstream 15189 16975923 ~ 16991112 (+)
xcr1b.1 NA coding downstream 105467 17066201 ~ 17071957 (+)
xcr1b.2 NA coding downstream 114996 17075730 ~ 17081658 (+)
cntnap2b cntnap2b,LOC108280767,LOC108433079,LOC107713665,LOC107757823,LOC107599243,LOC107663527,LOC107656139 coding downstream 278192 17238926 ~ 17293166 (+)
cul1a LOC108280768,LOC108433080,LOC105024245,LOC106599302,LOC106569218,LOC107663526 coding downstream 334430 17295164 ~ 17311204 (+)
G321602 NA non-coding upstream 65721 16892813 ~ 16893024 (+)
G321591 NA non-coding upstream 99167 16792714 ~ 16859578 (+)
G321582 NA non-coding upstream 166648 16750160 ~ 16792097 (+)
G321585 NA non-coding upstream 169138 16789186 ~ 16789607 (+)
G321589 NA non-coding upstream 186296 16759842 ~ 16772449 (+)
LOC117599934 NA non-coding downstream 564837 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 670480 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 761204 17721938 ~ 17786701 (+)
G322233 LOC108280496 non-coding downstream 893814 17854548 ~ 17855258 (+)
G322324 NA non-coding downstream 1113595 18074329 ~ 18074748 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 99063 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 165047 16791402 ~ 16793698 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 169777 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 210405 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 826381 16131335 ~ 16132364 (+)
fuz fuz other downstream 518100 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 609915 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 628338 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 1265187 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 1433289 18394023 ~ 18430022 (+)

Expression


Co-expression Network