G321998


Basic Information

Item Value
gene id G321998
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17359788 ~ 17389919 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU381314
aaaacaaaccaaaaaaaaaaaaaacatctagggGTTTTCTGTACacgcatctctctctctctgcatgcgGCATGGGGCCAGTTCtcatgataatgatgatgatgatgatgatggtgttccTTAAGGTATAAAGCCAAACGGGTCAAAGGTCAGGTCTTAGTGGGTTATTTCAGAAGTTTAGGCACCGCCATTGCCGTCATGGCTGCGATGGTTGGCACGGTGATATCCCTGAAGATGGGCAGCGTGTTGGGGGAGATGGACGGTTTGCTCTGGTTCAGTGTCTCAATGATCATCTGCCGTGTGTCACGATTGGCATCGCCTCGAACTGCCAGCAAGGCCACGATGTGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU381314 True 350 lncRNA 0.49 2 17359788 17389919

Neighbor

gene id symbol gene type direction distance location
viml NA coding downstream 126652 17221945 ~ 17233136 (-)
pde1cb pde1c,pde1cb,LOC108280739,LOC108433077,LOC107757825,LOC107098293 coding downstream 140615 17118184 ~ 17219173 (-)
neurod6b LOC108280937 coding downstream 252961 17104501 ~ 17106827 (-)
trnal-uaa_4 NA coding downstream 278685 17081021 ~ 17081103 (-)
fyco1b LOC108280757,LOC108433075 coding downstream 292211 17049144 ~ 17067577 (-)
pter pter,LOC107681810 coding upstream 128124 17518043 ~ 17522229 (-)
mmp16b LOC108280576,LOC108430178,LOC107552291,LOC107566471 coding upstream 138047 17527966 ~ 17552937 (-)
cables1 cables1,LOC107681774 coding upstream 283215 17673134 ~ 17700867 (-)
gata6 gata6 coding upstream 356700 17746619 ~ 17753965 (-)
mib1 mib1,LOC107681781,LOC107550435,LOC107747519 coding upstream 396028 17785947 ~ 17841185 (-)
G321652 NA non-coding downstream 615773 16742906 ~ 16744015 (-)
G321536 NA non-coding downstream 750231 16608816 ~ 16609557 (-)
LOC113533305 NA non-coding downstream 812287 16546239 ~ 16547501 (-)
G321505 NA non-coding downstream 839418 16518388 ~ 16520370 (-)
G321470 NA non-coding downstream 958261 16399300 ~ 16401527 (-)
G322072 fuz non-coding upstream 90523 17480442 ~ 17481385 (-)
G322251 yme1l1b,yme1l1,LOC108430171,LOC107681681 non-coding upstream 459233 17849152 ~ 17850372 (-)
G322250 NA non-coding upstream 462714 17852633 ~ 17853837 (-)
G322310 bambib,LOC108280666,LOC108430169 non-coding upstream 600845 17990764 ~ 17992868 (-)
LOC113546439 NA non-coding upstream 954127 18344046 ~ 18346844 (-)
trnal-uaa_3 NA other downstream 386018 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 771972 16564708 ~ 16587816 (-)
G321462 NA other downstream 992784 16357574 ~ 16367004 (-)
LOC113533563 NA other downstream 1635432 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 2128208 15222778 ~ 15231580 (-)
G322080 NA other upstream 110146 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 463928 17853847 ~ 17872108 (-)
G322538 NA other upstream 1004330 18394249 ~ 18394823 (-)
G322826 NA other upstream 1363853 18753772 ~ 18755593 (-)
mrpl37 mrpl37 other upstream 1595254 18985173 ~ 18994636 (-)

Expression


Co-expression Network