G322233 (LOC108280496)


Basic Information

Item Value
gene id G322233
gene name LOC108280496
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17854548 ~ 17855258 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU381586
GGGATAGCCCAGATGTGACAGCGCCTCCACGGCTTTATCGTTCACACAAGGCTTAGCACTGGATACAAACGTGTAGGAGATATGAGCTGAGAAATCCACAGAAAACCCGATACTAATGACCAGGTTGATCATTGAAATGGAGTCCAAGCTGATACCTAGCAATGCCATGAAGCCTGTGACTCCTACAATGACTGATCCGATGGCAAAAGTGACCCATAAAGCACAAACTGGACTTGGGATGAGTGCAAGCGAGATGACGAGCATCACCGCAGTAGCTATACTAACGGTCTGAATAGTGCTGCTTGCAATCACAGTGTATTGatcataatatataaatgtaggATGGTAGACCACTAATGGGAATTGGCAATTTTGGGCAGTTTTTCTCAACGTTTCTAGCATGATCTTCTCAGATGGAATGTTAACTGTTTGAAGAAATAAGCGTGAGGCTTGAATTGTATCATCAGTCATGTTGACGTCCAATCTGAGCATTGGTTGACCTTGTAGAAAAGGGTGCAGATGTTCCATAAATTCAACTTCTGAGCTGATGTTGAGGTGCTTTTCTTTGGCATAACTCTCAAAAGAATGAAGCCAAGAAGTGGCCAAATTCCCAACGAAAGGAAGGCCTTGGAATTCCGAAATGCAAGATTCCAGTTGAGCTCGTTCTACTTCGTCCCAGTATGGAAACGTAGCATTGACTGCCAGCATGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU381586 True 711 lncRNA 0.44 1 17854548 17855258

Neighbor

gene id symbol gene type direction distance location
yme1l1b yme1l1,yme1l1b,LOC108430171,LOC107708459,LOC107566723,LOC107747521 coding upstream 678 17842449 ~ 17853870 (+)
c1ql3b c1ql3b,LOC108280659,LOC107747511,LOC107566459,LOC107599856,LOC107691085,LOC107691073,LOC107681760,LOC107708591 coding upstream 337181 17514697 ~ 17517367 (+)
gpt2l LOC108280657,LOC108430180,LOC107599855,LOC107708598 coding upstream 347161 17487387 ~ 17507387 (+)
hecw1b hecw1b,LOC108280656,LOC108433086,LOC107600217,LOC107662981 coding upstream 376727 17433918 ~ 17477821 (+)
ccr12a LOC108280814 coding upstream 424823 17427910 ~ 17429725 (+)
rab18b rab18,rab18b,LOC108430170,LOC107566717,LOC107708473,LOC107681801,LOC107691240,LOC107550439 coding downstream 5053 17860311 ~ 17872029 (+)
wacb LOC108280665 coding downstream 110635 17965893 ~ 17979122 (+)
bambib LOC108280666,LOC108430169 coding downstream 135467 17990725 ~ 17994678 (+)
gnb4a gnb4,LOC108280743,LOC108440866,LOC103030165,LOC107705311,LOC107653516,LOC107564248,LOC105899196,LOC107724752 coding downstream 580091 18435349 ~ 18449078 (+)
si:ch1073-184j22.1 LOC108280744,LOC108440865,LOC107653514,LOC107564249,LOC107660327,LOC107705312 coding downstream 598878 18454136 ~ 18477637 (+)
G322146 NA non-coding upstream 67847 17721938 ~ 17786701 (+)
G322127 NA non-coding upstream 223036 17631214 ~ 17631512 (+)
LOC117599934 NA non-coding upstream 317388 17525571 ~ 17537160 (+)
G321704 LOC108410862 non-coding upstream 893814 16958745 ~ 16960734 (+)
G321602 NA non-coding upstream 961524 16892813 ~ 16893024 (+)
G322324 NA non-coding downstream 219071 18074329 ~ 18074748 (+)
G322365 NA non-coding downstream 343582 18198840 ~ 18199709 (+)
G322398 NA non-coding downstream 374137 18229395 ~ 18231463 (+)
G322405 NA non-coding downstream 483071 18338329 ~ 18343490 (+)
G322429 NA non-coding downstream 515469 18370727 ~ 18373883 (+)
npc1 npc1 other upstream 188335 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 217939 17570649 ~ 17636609 (+)
fuz fuz other upstream 370871 17478834 ~ 17483677 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 994866 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 1060850 16791402 ~ 16793698 (+)
si:ch211-162e15.3 LOC108280563 other downstream 370663 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 538765 18394023 ~ 18430022 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 960751 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 1089440 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 1349400 19204658 ~ 19220229 (+)

Expression


Co-expression Network