G322250


Basic Information

Item Value
gene id G322250
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17852633 ~ 17853837 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU381604
ccaCTCATTCATCATTAATGATGCACGAACTCAAttccaaataaaaatccatCAAACTTCAAGCTTACATTCTTCTATACATCTATATACAAAGATAAAATGTTCCAACATAACACAAGTTTATTGATATATACATGATTAACATAGATTGGATAAAGGAAAGGTAAAGGTAGACCAAACCAAACTATACTTAGTTCTAAAGAATACCGTGTATTTCACTAATGCAGCAATACACAAATAACCAGCAACCTCAGCCAAGCCTGTAAGGAGACTTTAGGATTGTGTATGGCttttaaataatgcttttttttcccaatacaTAATGTagcatatatacaatatttcagATATTGTCTCTAATTTTAGTTTCATGATCACAGAGAATGGTGGAAATGAGAACCAGACTAAATGAAATTTTCAGACTTAAACACTTTTAAAGTCCAGATTTTGCACTAACTGACCTTGTGACTATTGTGACAGCAGTGTTTTCTCTAGCTATACGTCATCTGTTTCTGATTTCTAGTTTGTGAAACCCTGTCTTTGGTAAAGTCAGTACGAATAAACACATAGTCTCCGTATTGATCTACAGACCTTCCTGTGGAATTCTGACAAAGTAATCCAGCATGCTGTGCCAAAATTAGAAGATCCGAAAAGCAGCATTTTTCCCCCCCCACAAGACAGTGCATACTCTAAACatacatcactgtcattataTCTACAAAGTGCATTGAGAATTTCTCATGTCCTGTACATTTCCATATGTTTTCCTAAAGGCCACCATGAGCAGCGATTACACGTCATCTGACTCCGTGTCTCTGCATACATCACCTCTCCACTGTGGAGAACTTAGTGGGAAATGCCTTTAGGCAAGCGGGAATTATGGAGTAGTGTGGATTTAAACACATGTTCATCATTTACCTATATGTACGTACAGAGCAAAAAAGGCTCGAACTTAAGCTTATCAGGAGGTTGTATTGCTTATGCGCTtatgtacatttacacacacacacacacacacacacacaccacacggtGTGAGACTCATCTGCTGCCCAACGCCTTCCCCTCCAAGACCATCTGAATCTCTCTGGCGTCCAGCGTCTCATACCTCAGCAGAGCCTCAGCCAGGTTCTTATGCTCTTTCGCACGGGCCTTCAGGAGAGCTTTAGCACGCTCATATGAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU381604 True 1185 lncRNA 0.39 2 17852633 17853837

Neighbor

gene id symbol gene type direction distance location
mib1 mib1,LOC107681781,LOC107550435,LOC107747519 coding downstream 11448 17785947 ~ 17841185 (-)
gata6 gata6 coding downstream 98668 17746619 ~ 17753965 (-)
cables1 cables1,LOC107681774 coding downstream 151766 17673134 ~ 17700867 (-)
mmp16b LOC108280576,LOC108430178,LOC107552291,LOC107566471 coding downstream 299696 17527966 ~ 17552937 (-)
pter pter,LOC107681810 coding downstream 330404 17518043 ~ 17522229 (-)
mkxb mkx coding upstream 23506 17877343 ~ 17890855 (-)
LOC113546406 LOC108280815 coding upstream 56558 17910395 ~ 17964294 (-)
tmtopsa tmtopsa,LOC108280164,LOC108430153 coding upstream 219297 18073134 ~ 18104805 (-)
tnk2b tnk2 coding upstream 278119 18131956 ~ 18185148 (-)
LOC113546402 LOC108280489 coding upstream 332071 18185908 ~ 18194006 (-)
G322251 yme1l1b,yme1l1,LOC108430171,LOC107681681 non-coding downstream 2261 17849152 ~ 17850372 (-)
G322072 fuz non-coding downstream 371248 17480442 ~ 17481385 (-)
G321998 NA non-coding downstream 462714 17359788 ~ 17389919 (-)
G321652 NA non-coding downstream 1108618 16742906 ~ 16744015 (-)
G321536 NA non-coding downstream 1243076 16608816 ~ 16609557 (-)
G322310 bambib,LOC108280666,LOC108430169 non-coding upstream 136927 17990764 ~ 17992868 (-)
LOC113546439 NA non-coding upstream 490209 18344046 ~ 18346844 (-)
G322550 LOC108280742,LOC107705296,LOC107653517,LOC107564246 non-coding upstream 572896 18426733 ~ 18427069 (-)
G322551 NA non-coding upstream 575822 18429659 ~ 18430003 (-)
G322552 NA non-coding upstream 576298 18430135 ~ 18432743 (-)
G322080 NA other downstream 351801 17500065 ~ 17500832 (-)
trnal-uaa_3 NA other downstream 878863 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 1264817 16564708 ~ 16587816 (-)
G321462 NA other downstream 1485629 16357574 ~ 16367004 (-)
LOC113533563 NA other downstream 2128277 15687082 ~ 15724356 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 10 17853847 ~ 17872108 (-)
G322538 NA other upstream 540412 18394249 ~ 18394823 (-)
G322826 NA other upstream 899935 18753772 ~ 18755593 (-)
mrpl37 mrpl37 other upstream 1131336 18985173 ~ 18994636 (-)
tceanc2 tceanc2 other upstream 1149402 19003239 ~ 19006379 (-)

Expression


Co-expression Network