G322251 (yme1l1b,yme1l1,LOC108430171,LOC107681681)


Basic Information

Item Value
gene id G322251
gene name yme1l1b,yme1l1,LOC108430171,LOC107681681
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17849152 ~ 17850372 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU381605
atctCTGACAGTAAACATCATCCTATCAACGATTACAGGTTTTCTTTAATCCGTTTATTTGTTGTGTCCGCCGTagaaatccctgtgaatgagctgttactatagaaacgctaactGGAAACGATATTAGagcgagcacattaatataaacctgtgatctgcagctgtcACGGCTGCCGTTATAGAAGAATAATCAAcgtcttctgaccaatcagagtcgagaaTTCGTCAGGCTTTTGAATTAAACTCGATATGTAAAAGCTGTATAACAAGCGAATAACAGCTGactttttaactatttaacGATTCATTAGCACAAAAACCGAGCGAGTCTGACTCACGTGACCCAGAGTGGGGCCTCTCGGCATGATCGTAGCCTTGTTGATGGGCATGGCGTCTTTGGTGTAGTATGCGATGATGGCGTGTCCTGACTCGTGGTAGGCTGTGATCACTTTGTTTTTCTTATCTATCTCGGCACTCCGGCGCTCCGGGCCCATCAGGATTTTGTCCTTGGCGAACTCCAGCTCCTTCATGGTCACCATGTCTTTCCCGTCCACAGCAGCCTTCAAGGCAGCCTGGTTCACCAGGTTCTCCAGCTCGGCTCCGGAGAAACCCACCGTTCCTCTGGCAATGATCTCGGCCT

Function

symbol description
yme1l1b Predicted to enable ATP-dependent peptidase activity. Predicted to be involved in mitochondrion organization and protein quality control for misfolded or incompletely synthesized proteins. Predicted to be located in membrane. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in optic atrophy 11. Orthologous to human YME1L1 (YME1 like 1 ATPase).
yme1l1 Enables ATP-dependent peptidase activity. Involved in several processes, including cellular protein catabolic process; mitochondrial protein processing; and protein hexamerization. Located in mitochondrial inner membrane and nuclear body. Implicated in optic atrophy 11.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU381605 True 643 lncRNA 0.47 2 17849152 17850372

Neighbor

gene id symbol gene type direction distance location
mib1 mib1,LOC107681781,LOC107550435,LOC107747519 coding downstream 7967 17785947 ~ 17841185 (-)
gata6 gata6 coding downstream 95187 17746619 ~ 17753965 (-)
cables1 cables1,LOC107681774 coding downstream 148285 17673134 ~ 17700867 (-)
mmp16b LOC108280576,LOC108430178,LOC107552291,LOC107566471 coding downstream 296215 17527966 ~ 17552937 (-)
pter pter,LOC107681810 coding downstream 326923 17518043 ~ 17522229 (-)
mkxb mkx coding upstream 26971 17877343 ~ 17890855 (-)
LOC113546406 LOC108280815 coding upstream 60023 17910395 ~ 17964294 (-)
tmtopsa tmtopsa,LOC108280164,LOC108430153 coding upstream 222762 18073134 ~ 18104805 (-)
tnk2b tnk2 coding upstream 281584 18131956 ~ 18185148 (-)
LOC113546402 LOC108280489 coding upstream 335536 18185908 ~ 18194006 (-)
G322072 fuz non-coding downstream 367767 17480442 ~ 17481385 (-)
G321998 NA non-coding downstream 459233 17359788 ~ 17389919 (-)
G321652 NA non-coding downstream 1105137 16742906 ~ 16744015 (-)
G321536 NA non-coding downstream 1239595 16608816 ~ 16609557 (-)
LOC113533305 NA non-coding downstream 1301651 16546239 ~ 16547501 (-)
G322250 NA non-coding upstream 2261 17852633 ~ 17853837 (-)
G322310 bambib,LOC108280666,LOC108430169 non-coding upstream 140392 17990764 ~ 17992868 (-)
LOC113546439 NA non-coding upstream 493674 18344046 ~ 18346844 (-)
G322550 LOC108280742,LOC107705296,LOC107653517,LOC107564246 non-coding upstream 576361 18426733 ~ 18427069 (-)
G322551 NA non-coding upstream 579287 18429659 ~ 18430003 (-)
G322080 NA other downstream 348320 17500065 ~ 17500832 (-)
trnal-uaa_3 NA other downstream 875382 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 1261336 16564708 ~ 16587816 (-)
G321462 NA other downstream 1482148 16357574 ~ 16367004 (-)
LOC113533563 NA other downstream 2124796 15687082 ~ 15724356 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 3475 17853847 ~ 17872108 (-)
G322538 NA other upstream 543877 18394249 ~ 18394823 (-)
G322826 NA other upstream 903400 18753772 ~ 18755593 (-)
mrpl37 mrpl37 other upstream 1134801 18985173 ~ 18994636 (-)
tceanc2 tceanc2 other upstream 1152867 19003239 ~ 19006379 (-)

Expression


Co-expression Network