G322310 (bambib,LOC108280666,LOC108430169)


Basic Information

Item Value
gene id G322310
gene name bambib,LOC108280666,LOC108430169
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17990764 ~ 17992868 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU381679
CAGGCTTCCTCCCTGGCTGTAGGTGAGATCCTGTGGACCTCTGTAATTGCACATATCCTCGTGACAGCACTCGAGCGTGGCATGGCCGTGCAGGGCATCGTGGGTAGCCTCGGATCGGCACACGCTTCCTCCGTTTAGGGCAGGCTCGTAACAGCCGTGCGAGAGTGGAGATTTGGAGCTTTGGGGATCTAAGATACGCGTGAAGCAGGCGTTAAGCTCCGATTTGCACATGTAACCGGTAGCCACACAGTGCGGTGAGTCACAATAACACCGGATTTCTCCTGGTTAAGAGCACAGCCATGGCCCAGAGCTCCAGCTGCAGCCAAATGGAAACCAGGCGCTCCATTAAGGACACTTTTacacttctgtctctgtctcttctgtctctgtctctgtctctgtgtctggcTCTCAGCTTGTCCACGACACACACATCATGATGCAGGACAAATCCGGAAAATAATCCAACATCATCATCCCAAATCACATCACAGAGTCCTCTCAAAGACACAAACACTCTCTTCTAAAAGGCTACTTTTCAGAAAGCATGTACTTTTCACATCCGGATTAAGATCAAAGATAAATTCCAATGCTtggcttgttttgttttgctttttttctctttttctttttggtgcTGATGTTTTTTGAGAATAAAAGTCCAAACAGAAACACTGACACTCCAC

Function

symbol description
bambib Predicted to enable frizzled binding activity. Predicted to be involved in transforming growth factor beta receptor signaling pathway. Predicted to act upstream of or within negative regulation of transforming growth factor beta receptor signaling pathway and positive regulation of canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including ectoderm; epidermis; optic vesicle; pectoral fin; and pectoral fin bud. Human ortholog(s) of this gene implicated in colorectal cancer. Orthologous to human BAMBI (BMP and activin membrane bound inhibitor).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU381679 True 686 lncRNA 0.48 2 17990764 17992868

Neighbor

gene id symbol gene type direction distance location
LOC113546406 LOC108280815 coding downstream 26470 17910395 ~ 17964294 (-)
mkxb mkx coding downstream 99909 17877343 ~ 17890855 (-)
mib1 mib1,LOC107681781,LOC107550435,LOC107747519 coding downstream 149579 17785947 ~ 17841185 (-)
gata6 gata6 coding downstream 236799 17746619 ~ 17753965 (-)
cables1 cables1,LOC107681774 coding downstream 289897 17673134 ~ 17700867 (-)
tmtopsa tmtopsa,LOC108280164,LOC108430153 coding upstream 80266 18073134 ~ 18104805 (-)
tnk2b tnk2 coding upstream 139088 18131956 ~ 18185148 (-)
LOC113546402 LOC108280489 coding upstream 193040 18185908 ~ 18194006 (-)
LOC113546400 LOC108280488 coding upstream 202051 18194919 ~ 18211462 (-)
dlg1l dlg1l,LOC108280564,LOC108440872,LOC105899217 coding upstream 237086 18229954 ~ 18314989 (-)
G322250 NA non-coding downstream 136927 17852633 ~ 17853837 (-)
G322251 yme1l1b,yme1l1,LOC108430171,LOC107681681 non-coding downstream 140392 17849152 ~ 17850372 (-)
G322072 fuz non-coding downstream 509379 17480442 ~ 17481385 (-)
G321998 NA non-coding downstream 600845 17359788 ~ 17389919 (-)
G321652 NA non-coding downstream 1246749 16742906 ~ 16744015 (-)
LOC113546439 NA non-coding upstream 351178 18344046 ~ 18346844 (-)
G322550 LOC108280742,LOC107705296,LOC107653517,LOC107564246 non-coding upstream 433865 18426733 ~ 18427069 (-)
G322551 NA non-coding upstream 436791 18429659 ~ 18430003 (-)
G322552 NA non-coding upstream 437267 18430135 ~ 18432743 (-)
LOC117599933 NA non-coding upstream 481356 18474224 ~ 18485480 (-)
LOC113546399 LOC108280496,LOC108430154 other downstream 118656 17853847 ~ 17872108 (-)
G322080 NA other downstream 489932 17500065 ~ 17500832 (-)
trnal-uaa_3 NA other downstream 1016994 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 1402948 16564708 ~ 16587816 (-)
G321462 NA other downstream 1623760 16357574 ~ 16367004 (-)
G322538 NA other upstream 401381 18394249 ~ 18394823 (-)
G322826 NA other upstream 760904 18753772 ~ 18755593 (-)
mrpl37 mrpl37 other upstream 992305 18985173 ~ 18994636 (-)
tceanc2 tceanc2 other upstream 1010371 19003239 ~ 19006379 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other upstream 1082132 19075000 ~ 19077917 (-)

Expression


Co-expression Network