G322550 (LOC108280742,LOC107705296,LOC107653517,LOC107564246)


Basic Information

Item Value
gene id G322550
gene name LOC108280742,LOC107705296,LOC107653517,LOC107564246
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18426733 ~ 18427069 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU381963
GAGTGGGGATGGGGGAGATGCTGGAGCCCCTGCGTTGGGGCAGTGGTGAGCCGTCCAGAGCGCTGCGCTcctgtaggaggtgtgtgtaggtggggtTGTGTGTGATCCAGCGGTGCAGAGCCTCACACGCCTCCTGCTGCCGTCCCGCATTGGTCAAGCTCACCGCCAGCGCCATGAGAGCACTCAGGTTATTCGGGTGCAGCTCCAGACACCTGTGGacatatgagagagagagagagagagagatgttctgCATGGAAGGGGGTCAAAAATTTGTGTTTTCTAACATtgtaatctatctatctatctatctatctatgtgggAGGTTTTGTAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU381963 True 337 lncRNA 0.55 1 18426733 18427069

Neighbor

gene id symbol gene type direction distance location
phb2a phb2,LOC108440869,LOC100703857,LOC101465856,LOC107653518,LOC102211951,LOC102296991,LOC107564245 coding downstream 46219 18373327 ~ 18380514 (-)
ptmab NA coding downstream 82889 18340023 ~ 18343844 (-)
dlg1l dlg1l,LOC108280564,LOC108440872,LOC105899217 coding downstream 111744 18229954 ~ 18314989 (-)
LOC113546400 LOC108280488 coding downstream 215271 18194919 ~ 18211462 (-)
LOC113546402 LOC108280489 coding downstream 232727 18185908 ~ 18194006 (-)
si:ch1073-184j22.2 LOC108280510,LOC108440875 coding upstream 59210 18486279 ~ 18488416 (-)
wdr33 wdr33,LOC107653512,LOC107705313 coding upstream 63868 18490937 ~ 18516265 (-)
LOC113546416 LOC108280513 coding upstream 94332 18521401 ~ 18526982 (-)
LOC113546413 LOC108280516,LOC108280512 coding upstream 100101 18527170 ~ 18534602 (-)
LOC113546415 LOC108280512,LOC108280516 coding upstream 108044 18535113 ~ 18540009 (-)
LOC113546439 NA non-coding downstream 79889 18344046 ~ 18346844 (-)
G322310 bambib,LOC108280666,LOC108430169 non-coding downstream 433865 17990764 ~ 17992868 (-)
G322250 NA non-coding downstream 572896 17852633 ~ 17853837 (-)
G322251 yme1l1b,yme1l1,LOC108430171,LOC107681681 non-coding downstream 576361 17849152 ~ 17850372 (-)
G322072 fuz non-coding downstream 945348 17480442 ~ 17481385 (-)
G322551 NA non-coding upstream 2590 18429659 ~ 18430003 (-)
G322552 NA non-coding upstream 3066 18430135 ~ 18432743 (-)
LOC117599933 NA non-coding upstream 47155 18474224 ~ 18485480 (-)
G322827 NA non-coding upstream 329304 18756373 ~ 18756647 (-)
G322831 NA non-coding upstream 337690 18764759 ~ 18764999 (-)
G322538 NA other downstream 31910 18394249 ~ 18394823 (-)
LOC113546399 LOC108280496,LOC108430154 other downstream 554625 17853847 ~ 17872108 (-)
G322080 NA other downstream 925901 17500065 ~ 17500832 (-)
trnal-uaa_3 NA other downstream 1452963 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 1838917 16564708 ~ 16587816 (-)
G322826 NA other upstream 326703 18753772 ~ 18755593 (-)
mrpl37 mrpl37 other upstream 558104 18985173 ~ 18994636 (-)
tceanc2 tceanc2 other upstream 576170 19003239 ~ 19006379 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other upstream 647931 19075000 ~ 19077917 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other upstream 1049043 19476112 ~ 19507197 (-)

Expression


Co-expression Network