G322552


Basic Information

Item Value
gene id G322552
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18430135 ~ 18432743 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU381965
aaataacattttaatatcagtTATAAATACATGATCATATCTCACCTGTTTAAATTACATGACTTATTTACAAAATAGTCCCAGAGGTTATATGAAGTATTCTAACATGCTGAGTGTTCATTTTATACAACCTTTAATATTCCAAATCTACCAGAATAATCAGATTTTTCCAATAAATAGTTTATAGGTGTTACATTATGAGCTGTGGATCCTGATGTCATTAATGCAGTGGTGATATGACGCGTAACATTCGATTATTATAGCCAGAAAGCAGATTGAGCATTTAGATTAAAAACTGGAGGTTAGGGATTTGGATACATTACAGGATTCATGCGCGTTCACATCGTGATATCATTTTGTTTggattaaaaaggaaaataaatcatttttttcaacatatgTGAAATAATACAATCAGTATTATAATCAAGCGTATAATTTCTGGATAATGCTTTCATATAAAGCAGGTATAAAGAggattaacaataataataacaataataatgataataataataataatacaaacaaatatgGCTTGCATAGTTGTATCATAAATGAAAATCTACTCATGCTAGtaacccttacagaaaagtcacacaaacTTCACATGTGAATTTTACGTATGAGGTTTTTGGATGTTTCaggttttaaacacatttttcaaatagaaataaatcaaaataaaataaaaaaaattcaaaatgtgattttcttacgattcatttaatttcagcaATTAAATTTCACACGCAGTACAcgtgttttcatttttacctgctttttttcttcacgATTCATCTCTCTTTACATGCTCATTTTTTCACatagtgcatgtttttatttttccaagtgattaatttatttttatttttatttggcaCATGTAAggcatgttttaatttttccacctgatatttttttcatgattcatttatttttacattttaatgtcactTATAGggcatgtgcttttatttttccacgtgattttttttttcacataattattatttattttcacaagtcattaatttttacaatttaatttctttgaCGAGGGACATGCGCTTTTATTTCCACATGATTTTTCCCCCCtacatgaatcatttattttcttattaattttttcatGTGGTTTTCTCACACAGTtaatttcacatgttcattttagcatgttatttttCTACGTCATTTTGTTCCACAAGATTCAGTATTCTCCACACGTAATCACATATCACTCACATGTGAAATTTTGAGACTTTTCCGTAAGGAGAAGCGCGTAACCGTTCTCATGCCACTCcttgatcactttttttttttttaaattacacctTATTTTTATAGGATCTTATTATATATGACCCTAAAATAGTCTGCaaatgacctttgaccttctACAGTCCAACCACTGCAGGCGATGACGCTGGTTTTTGTCACCTGCATGTATTTGGGAAAGGGTTTAGTATCTTTGTGTTATTGCGCTTTCATACATTTCCCCACTTTCAACATGATGCTGtaggttttttcttttgccGTGACCTTTCATGCGAGGCGTTTGAAGTCGGCCCCCCACGGAGCCCCCGAGCTCTGCGCAGTCAAAGGGGAGCGCTGGAACACAGATGGCTCGGGGTAACACATCCTGCTGGCACACCTGGGCACATGACACGCCTCAGAGGGACCACTGTGTCCCGAGGAGAGACACACTTAATGTCACTCATCACCCCGGGGTCACTGTGGTGACTCGGTGTAGCAACAGTGCCATCGTGTGGCAGAAAAACAGAACTGCATCTCTACTAACCCTGCTTTCTTTACTATTTCTGTAGATCTTCCAAGATATGCATTGGAGTGATGAGGCTAATGCAGCTAACAAGTAGTGGgagcttatagctaccagtttagcatgcCTTACACAGTGTCATCTCAAAATGCTTGACAGAACTGAGTGCAAAAATTTGCATTCCCACTGTTCATTTTCCCTATAAATAGGACTCTTtgtatataaacctgttataacacacaccctgaatagtTAATCAGCCTTTACAGTGCCtagcataagtattcaccccctgaTGAGACCAACTATACTGATTTTtacaatattatgggctattttgtgtagattcatgacatacaaTCCCAATCCCAATTCCATCCATTTCGATTTCACTACAAAATGTTTTCAGGGAAAAGTTCATGGAGTGAATACtcatgcaaggcactgtatatttattacCAAACAATGAGATGGACATTTTGCTAAAACCTGGCAACCCGGATTAATCACATTAACTCTTCTGGAAATACAACCCAAAAGTACTGAACGTAGTTGAAGAAAGGTAAGTCTGAAACCACTCAAAACGAGCTGCTGGacttcacaaataaattcaggGTGTATGATTTGGGTGGATCTGAGGTTATTAAAGGTCATGTGCTAACTGTGTTTTCGCCGTGCTATAATTTGGTTCATATTCAAAGATACAAAgagcatttacattttacaacgCAATAGGAAAGACTATATTCTGAATTAGTCTTCTCTGAAATGTGcttgtattctctctctctttctctgtctcacacaaacacacacacacttagcatCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU381965 True 2609 lncRNA 0.35 1 18430135 18432743

Neighbor

gene id symbol gene type direction distance location
phb2a phb2,LOC108440869,LOC100703857,LOC101465856,LOC107653518,LOC102211951,LOC102296991,LOC107564245 coding downstream 49621 18373327 ~ 18380514 (-)
ptmab NA coding downstream 86291 18340023 ~ 18343844 (-)
dlg1l dlg1l,LOC108280564,LOC108440872,LOC105899217 coding downstream 115146 18229954 ~ 18314989 (-)
LOC113546400 LOC108280488 coding downstream 218673 18194919 ~ 18211462 (-)
LOC113546402 LOC108280489 coding downstream 236129 18185908 ~ 18194006 (-)
si:ch1073-184j22.2 LOC108280510,LOC108440875 coding upstream 53536 18486279 ~ 18488416 (-)
wdr33 wdr33,LOC107653512,LOC107705313 coding upstream 58194 18490937 ~ 18516265 (-)
LOC113546416 LOC108280513 coding upstream 88658 18521401 ~ 18526982 (-)
LOC113546413 LOC108280516,LOC108280512 coding upstream 94427 18527170 ~ 18534602 (-)
LOC113546415 LOC108280512,LOC108280516 coding upstream 102370 18535113 ~ 18540009 (-)
G322551 NA non-coding downstream 132 18429659 ~ 18430003 (-)
G322550 LOC108280742,LOC107705296,LOC107653517,LOC107564246 non-coding downstream 3066 18426733 ~ 18427069 (-)
LOC113546439 NA non-coding downstream 83291 18344046 ~ 18346844 (-)
G322310 bambib,LOC108280666,LOC108430169 non-coding downstream 437267 17990764 ~ 17992868 (-)
G322250 NA non-coding downstream 576298 17852633 ~ 17853837 (-)
LOC117599933 NA non-coding upstream 41481 18474224 ~ 18485480 (-)
G322827 NA non-coding upstream 323630 18756373 ~ 18756647 (-)
G322831 NA non-coding upstream 332016 18764759 ~ 18764999 (-)
G322849 NA non-coding upstream 379267 18812010 ~ 18812377 (-)
G322889 NA non-coding upstream 509835 18942578 ~ 18956617 (-)
G322538 NA other downstream 35312 18394249 ~ 18394823 (-)
LOC113546399 LOC108280496,LOC108430154 other downstream 558027 17853847 ~ 17872108 (-)
G322080 NA other downstream 929303 17500065 ~ 17500832 (-)
trnal-uaa_3 NA other downstream 1456365 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 1842319 16564708 ~ 16587816 (-)
G322826 NA other upstream 321029 18753772 ~ 18755593 (-)
mrpl37 mrpl37 other upstream 552430 18985173 ~ 18994636 (-)
tceanc2 tceanc2 other upstream 570496 19003239 ~ 19006379 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other upstream 642257 19075000 ~ 19077917 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other upstream 1043369 19476112 ~ 19507197 (-)

Expression


Co-expression Network