G322696


Basic Information

Item Value
gene id G322696
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18715395 ~ 18720439 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU382137
TTTATTTagaaaacatcctctacatgattgccatttctttgtaaacacacacagagtccctcccaactttggctcccagcaacagggtcatgtgtgatgtgcttgccatgtttcctgttaaagtccatcgcaaccttgcaacagtttcctgatccagccatgagaatgatttcaatatgttcttcttttgtcaaaggcattcttaaaggctatctgaaaaaaatatataatataaactaagtatgaaacattttgctaaattaaagtgttaatttcccctatgtatgggcCTCTGACGGTCGTCTCTGAGGTGTGCCTAATGGAGATGGTGCAAGTGGTGTGGACAGGAACTGGGCTACCTTTGGGACCATCTTCAATTCTGAAAGAAGAGATGGAAATCCATTATAACCATTTAGATTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU382137 True 420 lncRNA 0.40 2 18715395 18720439

Neighbor

gene id symbol gene type direction distance location
cwc25 cwc25,LOC102792885,LOC101487873 coding upstream 47823 18663158 ~ 18667572 (+)
fgf12a fgf12a,fgf12,LOC108280711,LOC108436038,LOC106568709,LOC105006885,LOC106598267,LOC103365152,LOC107549734 coding upstream 77691 18585063 ~ 18637704 (+)
mb21d2 mb21d2,LOC107705301,LOC107572431,LOC107673980 coding upstream 133175 18574380 ~ 18582220 (+)
crfb16 NA coding upstream 142892 18562098 ~ 18572503 (+)
LOC113546359 LOC108280706 coding upstream 169232 18543905 ~ 18546163 (+)
mffb LOC108280720 coding downstream 27088 18747527 ~ 18754060 (+)
bpnt2 impad1 coding downstream 36290 18756729 ~ 18763488 (+)
penka LOC108280728 coding downstream 70906 18791345 ~ 18797861 (+)
sdr16c5a LOC108280727 coding downstream 78764 18799203 ~ 18810210 (+)
cryz cryz coding downstream 198628 18919067 ~ 18925573 (+)
G322462 NA non-coding upstream 275529 18439167 ~ 18439866 (+)
G322446 NA non-coding upstream 282693 18432326 ~ 18432702 (+)
G322429 NA non-coding upstream 341512 18370727 ~ 18373883 (+)
G322405 NA non-coding upstream 371905 18338329 ~ 18343490 (+)
G322398 NA non-coding upstream 483932 18229395 ~ 18231463 (+)
G322738 NA non-coding downstream 44753 18765192 ~ 18765602 (+)
G322744 NA non-coding downstream 90666 18811105 ~ 18812335 (+)
G322746 NA non-coding downstream 92064 18812503 ~ 18812848 (+)
G322747 NA non-coding downstream 94175 18814614 ~ 18814817 (+)
G322802 NA non-coding downstream 238644 18959083 ~ 18959319 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 285373 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 488162 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 1049182 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 1078786 17570649 ~ 17636609 (+)
fuz fuz other upstream 1231718 17478834 ~ 17483677 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 95570 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 224259 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 484219 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 593421 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1408814 20129253 ~ 20281067 (+)

Expression


Co-expression Network