G322738


Basic Information

Item Value
gene id G322738
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18765192 ~ 18765602 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU382184
GTTCTATGCAGACCCCTGAAACTACCATAAAAGGTTGcaagtagaaccttttttttttggaagccaTGAACTATGGTAAAGAAACCtgtaaaggttctatgtagaaccctacactAAAGTGCTTCAATGTTTGAACGGGacccaagtagaacccttttaggaagttaagaacccttaattttCGAACAAGCCCTTAAAGAACCCCTAAGAGTGCACCATGGAAAACAAGTGAGTTTGCAAATACAGTGCTGTACACACttcaaatataaaacataaagagtctatataaatataaagggTCTATGTAGAACCATAAAACAGTGTTTTCTCTCAGAAAGATTGCAAGTGGAACAGTTTTTGGAAGTTTTGGAACAGTAgtttttgtgggaaaaaaaaaacatttgattcGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU382184 True 411 lncRNA 0.36 1 18765192 18765602

Neighbor

gene id symbol gene type direction distance location
bpnt2 impad1 coding upstream 1704 18756729 ~ 18763488 (+)
mffb LOC108280720 coding upstream 11132 18747527 ~ 18754060 (+)
LOC113546386 LOC108280704 coding upstream 48640 18692192 ~ 18716552 (+)
cwc25 cwc25,LOC102792885,LOC101487873 coding upstream 97620 18663158 ~ 18667572 (+)
fgf12a fgf12a,fgf12,LOC108280711,LOC108436038,LOC106568709,LOC105006885,LOC106598267,LOC103365152,LOC107549734 coding upstream 127488 18585063 ~ 18637704 (+)
penka LOC108280728 coding downstream 25743 18791345 ~ 18797861 (+)
sdr16c5a LOC108280727 coding downstream 33601 18799203 ~ 18810210 (+)
cryz cryz coding downstream 153465 18919067 ~ 18925573 (+)
fam151a fam151a coding downstream 165457 18931059 ~ 18936790 (+)
cdcp2 cdcp2 coding downstream 229955 18995557 ~ 19002207 (+)
G322696 NA non-coding upstream 44753 18715395 ~ 18720439 (+)
G322462 NA non-coding upstream 325326 18439167 ~ 18439866 (+)
G322446 NA non-coding upstream 332490 18432326 ~ 18432702 (+)
G322429 NA non-coding upstream 391309 18370727 ~ 18373883 (+)
G322405 NA non-coding upstream 421702 18338329 ~ 18343490 (+)
G322744 NA non-coding downstream 45503 18811105 ~ 18812335 (+)
G322746 NA non-coding downstream 46901 18812503 ~ 18812848 (+)
G322747 NA non-coding downstream 49012 18814614 ~ 18814817 (+)
G322802 NA non-coding downstream 193481 18959083 ~ 18959319 (+)
G322817 mrpl37 non-coding downstream 228156 18993758 ~ 18994623 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 335170 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 537959 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 1098979 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 1128583 17570649 ~ 17636609 (+)
fuz fuz other upstream 1281515 17478834 ~ 17483677 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 50407 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 179096 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 439056 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 548258 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1363651 20129253 ~ 20281067 (+)

Expression


Co-expression Network