G322744


Basic Information

Item Value
gene id G322744
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18811105 ~ 18812335 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU382190
tctagtcattctcctctgacctctctcatcagcaagacgTTGCTGGTCAAAcaattgcctttttttttttttttttttttaaccacaattCTCTATAGATaccgttgtgtgtgaaaattgcaggaaatcagcagtatctgaaatactcaaactgacaccaacaaccatgctgtggtcaaagtcactgagatttttaTCTCCATTcgaatgtttgatgtgaacggtAAACTAAAGCTCTGgatctgtatctgcaggattttatgcactgcactgctgacACATGGTGCTTTTTGAACCTGGAAATAAGTAATTTGGGACCATTTACAGGATCTATTTTGAACCCTCCGCCTGCTTGTTCTTGATAACTCAGttttattacagcagctctgatatgAACATGGAATcacactgccctctagtgggctccagactcaaacacactcattaataaTCATCCTTTCATCCTTACACACTCATCCTGTCCATCTTTTTTTGACTATAAATATACAGTGCATCCGGAAAGTATTCACAGCGCttcactttttcca
>TU382191
taaccacaattCTCTATAGATaccgttgtgtgtgaaaattgcaggaaatcagcagtatctgaaatactcaaactgacaccaacaaccatgctgtggtcaaagtcactgagatttttaTCTCCATTcgaatgtttgatgtgaacggtAAACTAAAGCTCTGgatctgtatctgcaggattttatgcactgcactgctgacACATGGTGCTTTTTGAACCTGGAAATAAGTAATTTGGGACCATTTACAGGATCTATTTTGAACCCTCCGCCTGCTTGTTCTTGATAACTCAGttttattacagcagctctgatatgAACATGGAATcacactgccctctagtgggctccagactcaaacacactcattaataaTCATCCTTTCATCCTTACACACTCATCCTGTCCATCTTTTTTTGACTATAAATATACAGTGCATCCGGAAAGTATTCACAGCGCttcactttttccacattttgttatgttacaGCCTCATTCCCAAATggattaaattcattattttcctcaaaattCTACAAACAATACCGCATAATGACAACGTGAAAGAAGTTTGTTTGAAATCTTTGcaaattttttgaaaataaaaaattttaaaaatcacatgtacataagtattcacagcCTTTGCCATGACACTCAAAATTGAGCTCAGGAGCATCCTGTTTCCACTGATCATccttgagatgtttctacaacTTGATTGGAATCCACCTGTGGTAAATTcagttgattggacatgatttggaaaggcaaaCCTGTCTATATAAGGTCCCACAGTTAACAGTGCATGTCAGAGCAcaaaccaagccatgaagtccaaggaaTTGTCTGTAGACAGGATTGTGTcgaggcacagatctggggaaggGTACAGAAAAGTATCTGCAGCATTGAAGGTCCCAGTgagcacagtggcctccatCATCcgtaaatggaagaagtttggaaccaccaggactcttcctagagccGGCCGCCCGGCCAAACTGAGCAAACCCCATCCAACCTGATGGAGCTTGAGAGATCCTGCaaagaagaatgagagaaactGCCCAAAAATAGGTGTGCCAAGCTTGTAGCATTATACTCAAAAGGATTTAATTGCTGTAAcagctgtaattgctgccaaaggtg

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU382190 False 548 lncRNA 0.39 1 18811105 18811652
TU382191 True 1152 lncRNA 0.41 1 18811184 18812335

Neighbor

gene id symbol gene type direction distance location
sdr16c5a LOC108280727 coding upstream 895 18799203 ~ 18810210 (+)
penka LOC108280728 coding upstream 13244 18791345 ~ 18797861 (+)
bpnt2 impad1 coding upstream 47617 18756729 ~ 18763488 (+)
mffb LOC108280720 coding upstream 57045 18747527 ~ 18754060 (+)
LOC113546386 LOC108280704 coding upstream 94553 18692192 ~ 18716552 (+)
cryz cryz coding downstream 106732 18919067 ~ 18925573 (+)
fam151a fam151a coding downstream 118724 18931059 ~ 18936790 (+)
cdcp2 cdcp2 coding downstream 183222 18995557 ~ 19002207 (+)
cdc7 cdc7,LOC102782901 coding downstream 194192 19006527 ~ 19014193 (+)
rpap2 rpap2 coding downstream 215546 19027881 ~ 19042630 (+)
G322738 NA non-coding upstream 45503 18765192 ~ 18765602 (+)
G322696 NA non-coding upstream 90666 18715395 ~ 18720439 (+)
G322462 NA non-coding upstream 371239 18439167 ~ 18439866 (+)
G322446 NA non-coding upstream 378403 18432326 ~ 18432702 (+)
G322429 NA non-coding upstream 437222 18370727 ~ 18373883 (+)
G322746 NA non-coding downstream 168 18812503 ~ 18812848 (+)
G322747 NA non-coding downstream 2279 18814614 ~ 18814817 (+)
G322802 NA non-coding downstream 146748 18959083 ~ 18959319 (+)
G322817 mrpl37 non-coding downstream 181423 18993758 ~ 18994623 (+)
G322957 NA non-coding downstream 295051 19107386 ~ 19109334 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 381083 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 583872 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 1144892 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 1174496 17570649 ~ 17636609 (+)
fuz fuz other upstream 1327428 17478834 ~ 17483677 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 3674 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 132363 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 392323 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 501525 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1316918 20129253 ~ 20281067 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G36535 NA non-coding CI01000005 null 1705218 ~ 1720596 (-)
rainbow trout (Oncorhynchus mykiss) G36701 NA non-coding NC_048565.1 CM023219.2 34839402 ~ 34839649 (-)
rainbow trout (Oncorhynchus mykiss) LOC110502661 golga7b misc NC_048587.1 CM023241.2 35954220 ~ 36014458 (-)
eurasian perch (Perca fluviatilis) G231514 LOC101480717,LOC102290810,LOC102794459 unknown NC_053135.1 CM020932.1 2096875 ~ 2098749 (+)
bowfin (Amia calva) G39709 LOC101154678 unknown CM030125.1 CM030125.1 7835346 ~ 7836214 (+)
mexican tetra (Astyanax mexicanus) G231003 NA unknown NW_019170761.1 APWO02000359.1 18507 ~ 22440 (+)