G322802


Basic Information

Item Value
gene id G322802
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18959083 ~ 18959319 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU382261
CTTGAATAAACTGTTATTGctgtcgcttgtgggcgtgtaTCAGCTGTTACtgttgtcgcttgtgggcgtgtatcaactgttacTGctgtcgcttgtgggcgtgtatcaactgttactgctgtcgcttgtgggcgtgtatcaactgttactgctgtcgcttgtgggcgtgtaTCAACTGTTACTGTTGTCGCCTGTGGGCGTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU382261 True 204 lncRNA 0.50 2 18959083 18959319

Neighbor

gene id symbol gene type direction distance location
fam151a fam151a coding upstream 22293 18931059 ~ 18936790 (+)
cryz cryz coding upstream 33510 18919067 ~ 18925573 (+)
sdr16c5a LOC108280727 coding upstream 148873 18799203 ~ 18810210 (+)
penka LOC108280728 coding upstream 161222 18791345 ~ 18797861 (+)
bpnt2 impad1 coding upstream 195595 18756729 ~ 18763488 (+)
cdcp2 cdcp2 coding downstream 36238 18995557 ~ 19002207 (+)
cdc7 cdc7,LOC102782901 coding downstream 47208 19006527 ~ 19014193 (+)
rpap2 rpap2 coding downstream 68562 19027881 ~ 19042630 (+)
rpl5a rpl5-a,rpl5,LOC103397662,LOC103368809,LOC107659024,LOC107566486 coding downstream 114388 19073707 ~ 19077866 (+)
mtf2 mtf2,LOC107743365,LOC107568093 coding downstream 135603 19094922 ~ 19106149 (+)
G322747 NA non-coding upstream 144266 18814614 ~ 18814817 (+)
G322746 NA non-coding upstream 146235 18812503 ~ 18812848 (+)
G322744 NA non-coding upstream 146748 18811105 ~ 18812335 (+)
G322738 NA non-coding upstream 193481 18765192 ~ 18765602 (+)
G322696 NA non-coding upstream 238644 18715395 ~ 18720439 (+)
G322817 mrpl37 non-coding downstream 34439 18993758 ~ 18994623 (+)
G322957 NA non-coding downstream 148067 19107386 ~ 19109334 (+)
G323104 NA non-coding downstream 474911 19434230 ~ 19438075 (+)
G323168 NA non-coding downstream 553405 19512724 ~ 19523033 (+)
G323206 LOC107743377 non-coding downstream 622998 19582317 ~ 19583323 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other upstream 87723 18816009 ~ 18871360 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 529061 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 731850 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 1292870 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 1322474 17570649 ~ 17636609 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 245339 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 354541 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1169934 20129253 ~ 20281067 (+)
G323534 NA other downstream 1479383 20438702 ~ 20440561 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other downstream 1678265 20637584 ~ 20663819 (+)

Expression


Co-expression Network