G322826


Basic Information

Item Value
gene id G322826
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18753772 ~ 18755593 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU382290
tttatttaaataaacaataaaacatcagATTACAATTATTCACAACATAGTCATGTTTGTGCTTCAGCACGCATGCCTCTTAACACACTTATACAACACAATCTGTTCATGTGCTATGGtacaacacttacacactcctgtttcaCACTCCTgttctacacactcctgtttcaCACACTCTtgttctacacacactcctgtttcaTTACTGCTgttctacacactcctgttctacacacactcctgtttcATTACTCCTgttctacacactcctgtttcaTTACTGCTGTTTCACACTCCTgttctacacactcctgtttcaTTACTGCTGTTtggaataaatgtgaaaatacacactttctttctttactttcctTTAGCACTAAATTCTTGCTATCTTTCAATACTCCATTCATTCAGCACttcaattctttctttcatattttcaatttttctttcagcattcattcattctttctgaagtaaattctttatttctttctttcctttcttccttcagCACtcaattcttttctttctttctttctttctttctttctttctttctttcagcattcaattcattcattctttctttccttttgctctcaattctttctttctttcctttcttttctttctttctttctttctttcaattcaTAAATTAATTCCTTCAGCataaaaattctttctttcagcACTCAGtatatccattcattcattcggattctgattggtcatcaggtgttgattaattttccagaacagcagctctgacagtagtgcagctgaaaatgacagtttcatattaatgcgctcgttctaatacgttatggtttctatagtaactgctcaCTCACtgggacttgtacggtggacgctccgcataaacagattaaaaacacgtttgtaattgttgatatggtgaagttttctgtaaggagatgttcgtttcacatttatggaaggagtctccagtgtcagtgctttgtaacagtcagaggtaaagctgtaaagctgtaattttaagttttctgagcgaacgactgtttatagctgctataacgtaagtgagaacaggaggcAACTTGCTtcacggacgttccacaacattaaatgtaactataaatggataaaaactacagtgtcattatttaataaattaagaaatgTAGTAATTGTTAAATTGCTGtagtagaagaggaataaaacacactgattattttcctctaacagcacgtcctgaagtcaTTTACTCTTTACTTAATGATGTCGTATTCATGAACATGATGCTATTTAACAACCACTGAACACATTATTGGCACTAATCACCTACaggaagtgattttttttttttttttttgtacacgaACACAGTTTATATACAGGTTTGAGAAACTGACAGTCATATCAGTACAGCTCCATTTAGTTTaaactattggcaccctctcattttttttttgttgcccaAACTATATtatctagcttttttttttttttagctaattttTGGTATCTGGTCTGAGTTTAGACATTAGGAAGAATATCTGAGTGATAATGAATGTAGATATATACAAAAGGGAGATCTGAGAGTCTGATTAAATGCAGCCTGAGATGATGAGTGGATCGAGGCGATGGCTCCAGCGCTCAGCGGCGTACCCACATCCACGTGTTCACCAGCCAGAAAGCAACGGTGAGGGAGTACATCACCATCTCCCGCCTCACTCGCTCTTTATTCTCATGCTCCAGCACCTGAAGTCTACGGTTCAACTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU382290 True 1778 TUCP 0.36 2 18753772 18755593

Neighbor

gene id symbol gene type direction distance location
trnav-aac_21 NA coding downstream 6528 18747172 ~ 18747244 (-)
nyap2b LOC108280226 coding downstream 12205 18717300 ~ 18741567 (-)
LOC113546387 LOC108280703,LOC108436027 coding downstream 61681 18671660 ~ 18692091 (-)
sst2 sst2 coding downstream 83159 18669034 ~ 18670613 (-)
cldn15la cld15 coding downstream 193216 18556334 ~ 18560556 (-)
lhx8a lhx8,lhx8a,LOC108436043 coding upstream 117522 18873115 ~ 18883126 (-)
tyw3 tyw3 coding upstream 158609 18914202 ~ 18918164 (-)
acot11a acot11 coding upstream 181191 18936784 ~ 18949316 (-)
glmna glmn coding upstream 260889 19016482 ~ 19027883 (-)
gfi1aa LOC108280759 coding upstream 288303 19043896 ~ 19053142 (-)
LOC117599933 NA non-coding downstream 268292 18474224 ~ 18485480 (-)
G322552 NA non-coding downstream 321029 18430135 ~ 18432743 (-)
G322551 NA non-coding downstream 323769 18429659 ~ 18430003 (-)
G322550 LOC108280742,LOC107705296,LOC107653517,LOC107564246 non-coding downstream 326703 18426733 ~ 18427069 (-)
LOC113546439 NA non-coding downstream 406928 18344046 ~ 18346844 (-)
G322827 NA non-coding upstream 780 18756373 ~ 18756647 (-)
G322831 NA non-coding upstream 9166 18764759 ~ 18764999 (-)
G322849 NA non-coding upstream 56417 18812010 ~ 18812377 (-)
G322889 NA non-coding upstream 186985 18942578 ~ 18956617 (-)
G323007 NA non-coding upstream 299894 19055487 ~ 19066748 (-)
G322538 NA other downstream 358949 18394249 ~ 18394823 (-)
LOC113546399 LOC108280496,LOC108430154 other downstream 881664 17853847 ~ 17872108 (-)
G322080 NA other downstream 1252940 17500065 ~ 17500832 (-)
trnal-uaa_3 NA other downstream 1780002 16973527 ~ 16973770 (-)
stk11 stk11 other downstream 2165956 16564708 ~ 16587816 (-)
mrpl37 mrpl37 other upstream 229580 18985173 ~ 18994636 (-)
tceanc2 tceanc2 other upstream 247646 19003239 ~ 19006379 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other upstream 319407 19075000 ~ 19077917 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other upstream 720519 19476112 ~ 19507197 (-)
G323726 NA other upstream 1439701 20195294 ~ 20195672 (-)

Expression


Co-expression Network