gng12a (gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117)


Basic Information

Item Value
gene id gng12a
gene name gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19204658 ~ 19220229 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU382490
AAACAGCGCAGTCAGCGGAAGGTCGTTTGTTTTCGTCAATGTGGCTGATCGTAGCGTCGCTGAAAGTGTTACAAACTGTTATTATCGAAGTGAAAACACTGAACCACACTGTAGCTGAGGATCTGAGTGCTGTTTCTGGACATACAGCAGCTGGTGGAGCTTTCTGGAGCAGCTCACTGCGTCTGTGCGGATTTTGGAGAAGAAAGTGGAAGCGCAGGATATTTGAAGTTGCATGTTGGTGAAAATGTCCTCTAAGACGAGCTCGAACAACATGGCCCTTGCAAGGAGGACGGTACAGCAGCTCCGGGTCGAGGCCAGTATCGAGAGGATAAAGGTGTCCAAAGCTTCAGCCGATCTCATGCGCTACTGCAGCGAACACGCCAAGTACGACCCTCTGCTCATGGGCATCCCGGCTTCAGAGAACCCCTTCAAGGACAAAAAGCCCTGCACTTTATTGTAGTCACTGCACTTCACCTTCCTTCGTATTTAATTAACACTGCCACTCGACACTGCCTTAACTCTAAACCTGTTTCAGGCTGCGTGTAAATCCACTGTGTGTTAACGTCAATCAGCACTAATCACAGCCGATCTTTCTGTTGTTATGAATAACGTATAGTGTGTGTTCCTTTGTTTGTTCATGCTGAACTTAATGCATTCCAGGGAATTTGAGTAAAAACTGTGCCATGAAACGAATATGTTCTGGTCTGTATGAGAGTAAATCATTTCGTCCCT
>XM_026946342.2
GCAAAGTTCGCATCGTGCGCAAACAGCGCAGTCAGCGGAAGGTCGTTTGTTTTCGTCAATGTGGCTGATCGTAGCGTCGCTGAAAGTGTTACAAACTGTTATTATCGAAGTGAAAACACTGAACCACACTGTAGCTGAGGATCTGAGTGCTGTTTCTGGACATACAGCAGCTGGTGGAGCTTTCTGGAGCAGCTCACTGCGTCTGTGCGGATTTTGGAGAAGAAAGTGGAAGCGCAGGATATTTGAAGTTGCATGTTGGTGAAAATGTCCTCTAAGACGAGCTCGAACAACATGGCCCTTGCAAGGAGGACGGTACAGCAGCTCCGGGTCGAGGCCAGTATCGAGAGGATAAAGGTGTCCAAAGCTTCAGCCGATCTCATGCGCTACTGCAGCGAACACGCCAAGTACGACCCTCTGCTCATGGGCATCCCGGCTTCAGAGAACCCCTTCAAGGACAAAAAGCCCTGCACTTTATTGTAGTCACTGCACTTCACCTTCCTTCGTATTTAATTAACACTGCCACTCGACACTGCCTTAACTCTAAACCTGTTTCAGGCTGCGTGTAAATCCACTGTGTGTTAACGTCAATCAGCACTAATCACAGCCGATCTTTCTGTTGTTATGAATAACGTATAGTGTGTGTTCCTTTGTTTGTTCATGCTGAACTTAATGCATTCCAGGGAATTTGAGTAAAAACTGTGCCATGAAACGAATATGTTCTGGTCTGTATGAGAGTAAATCATTTCGTCCCTATTTCATCACCGTTGCTTGATGTCAAACAGCTTACATcaactttaatgtttttttttttttttttaaagagaaacataaAAATTATGTATGCAGGATGTTATTTTAGCTTATAACTGCGTGCGTGTGCCAGTATCTTGATACGTGATCTAAAATTGAAAGTATTAGGAGCGACTCATTTAAAATAGGCAGCGATTTGCTATGTATGATTTACAGATTAGATGTGCtttaatatgatacaatatacaatacaatgaTTACGTATTGTGCAAGCAGTTTTTACTCAAAAATGGAGCGAGTGTTACCTTTGAAAAGGCCACACCCTTTTTCTATtcataaaattatacatttatgttTTAGTTTTGTAAATTACAAACCACATCTTtaaatcaccacacacacacacacacacacacacacacacacacacacacagtgtacatgaGTGTAATATGGTGAAAAGAAAGGTTAGACTTCAATAATAAACCTATTGTTATAGTTTAAATGACATTGTTCCTTGTATGTGAAGCTATGAGAACATCTGCTTACATCTGCTTACATCATACTGCACTTTTCACAATGCAGTGCAGTGTTGAAAAACACCACCTTTGTCCCACTGACCTCAAACACTAAAGACTCGACTGTATCTTCTCAGATTTCAAGAGCTTCGTTACAACCAAAACAAGACACTTTTAGAGTTTATTCTGTAGGTTGTGATATTGTAGGAATCCCATTTACAGTCAAAACACCACTGACCATGGCATAGCACAGGGAATGCAAGATGAGCTGAAGAATTAACAGCTGGGTGCCAATACTTAAAAGCATCTATGATCCTGGTCGCCATTTTGAGGTTTGAGATTATACACATCAGAAGCTGAACTTAACTACAGCTACAGACATTGACATCTGATGCAACGTATTTCAAATTGTGAACGaaactgtttatatatacaaattaaatacttacgtttttaaattttctgacactaactattacatcatcatcatcatcatcatcatcccgcGTAATTAGCCACGTCAATGGTGAGGTTATGGAAGTGAAAGTtctgttcaggtttttttttttttttggtatagaGAAATTGATGTTTAGGGATAATTTTCAAACCTGACCAAATCGAAGTCATAGATTTAGTCTGATTTCAACTTTGTTGAAAAACAGCATTGCTGAACTAAATCCTAAATCAATCCTAAATCTGAAACTCACCAATCAGAGACGTCGCTTGCAAACGTAACCATGGAAACAGCATGTCATGGTGGCACACGTTGCAAGATTTCTAAGATACTACAGGTGATAGTAAAATAGACAATGTTGATAAAAACATGCTAAAATTGGAAGTGATTCAGTGACATCATTCACAATTCTAGGAATATCAGAATAACCTTCTACAATTGtccttttttcccattttttcccccaaaaaggTTTTTGCTTtgaaattatgtcattttcatgaCATCATTGTCCATCTTGTagttgtttggtttggtttaatgaatcattttctgaaatgtctatggagaaaacaaaagaggaatTTACTTCCAGAAGGAAGGCTGCTTAAAAAGTGGGCGGTCACTGTTGTGCGCTATTAATACAGTGAGTTAGTGAGTTAGCGAGCCAGCTATGCTCGGTGAAAGTGTATTGTAATCAGCTGACCGTTACAGACTCCGCCCCTTTGTGCTGCAAGTGGCGGCTGATGTGCTGTAGGTGTTACTACATCATGAGGAGAAttcacagagtgtgtgtttaaaacaatACTAAAATATAAGAAGTATAAGAAGTGAAGAAGATCCTCAAATGATGTATACATTTTGTAATCAGTTGTCTATTTGTAATattgcatttttgtgttttcttgcttttttccaTCCCAGTGACGTGATCCCATTTGAACGATTCTGTACGTCCTCTTAACCATGTCTCCTAAAcgattttattaaaatgatgcaaaataaattatttactggA

Function

symbol description
gng12a Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be part of heterotrimeric G-protein complex. Orthologous to human GNG12 (G protein subunit gamma 12).
gng12 Enables PDZ domain binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Located in extracellular exosome.

NR:

description
guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12-like isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0008152 metabolic process biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K04347 GNG12; guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12

RNA

RNA id representative length rna type GC content exon number start site end site
TU382490 False 732 lncRNA 0.47 3 19204678 19218238
XM_026946342.2 True 2743 mRNA 0.38 3 19204658 19220229

Neighbor

gene id symbol gene type direction distance location
wls wls coding upstream 17026 19163675 ~ 19187632 (+)
scinlb LOC108280481,LOC108436067,LOC107588891,LOC107700536,LOC107658127,LOC107568091,LOC107743367,LOC106598932 coding upstream 44515 19143608 ~ 19160143 (+)
ccdc18 ccdc18 coding upstream 67877 19110288 ~ 19136781 (+)
mtf2 mtf2,LOC107743365,LOC107568093 coding upstream 98509 19094922 ~ 19106149 (+)
rpl5a rpl5-a,rpl5,LOC103397662,LOC103368809,LOC107659024,LOC107566486 coding upstream 126792 19073707 ~ 19077866 (+)
dmbx1a dmbx1,dmbx1a,LOC107588924,LOC107743378,LOC107684938,LOC107551711,LOC107700538 coding downstream 64383 19284612 ~ 19297263 (+)
ptger4c LOC108280834 coding downstream 136183 19356412 ~ 19361261 (+)
glula LOC108280762,LOC107563291,LOC107677515,LOC107710552,LOC107700548 coding downstream 837358 20057587 ~ 20062476 (+)
elovl1a LOC108280856,LOC108438881,LOC103047025,LOC107553254,LOC107732201,LOC107700551 coding downstream 918715 20138944 ~ 20150410 (+)
cc2d1b LOC108280309,LOC107553237 coding downstream 937089 20157318 ~ 20180634 (+)
G322957 NA non-coding upstream 95324 19107386 ~ 19109334 (+)
G322817 mrpl37 non-coding upstream 210035 18993758 ~ 18994623 (+)
G322802 NA non-coding upstream 245339 18959083 ~ 18959319 (+)
G322747 NA non-coding upstream 389841 18814614 ~ 18814817 (+)
G322746 NA non-coding upstream 391810 18812503 ~ 18812848 (+)
G323104 NA non-coding downstream 214001 19434230 ~ 19438075 (+)
G323168 NA non-coding downstream 292495 19512724 ~ 19523033 (+)
G323206 LOC107743377 non-coding downstream 362088 19582317 ~ 19583323 (+)
G323240 NA non-coding downstream 423594 19643823 ~ 19644570 (+)
G323249 NA non-coding downstream 440387 19660616 ~ 19661232 (+)
ssbp3a ssbp3,ssbp3a other upstream 219576 18944698 ~ 18985082 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other upstream 333298 18816009 ~ 18871360 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 774636 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 977425 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 1538445 17589072 ~ 17666213 (+)
LOC113546339 NA other downstream 93631 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 909024 20129253 ~ 20281067 (+)
G323534 NA other downstream 1218473 20438702 ~ 20440561 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other downstream 1417355 20637584 ~ 20663819 (+)
G323615 NA other downstream 1800960 21021189 ~ 21157280 (+)

Expression


Co-expression Network