LOC113546339


Basic Information

Item Value
gene id LOC113546339
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19313860 ~ 19316206 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU382511
GGTGAATTTCTAGCAACTTCCTGCGTGTGACCTCCACTTGCGGAGTGCGCGATTAAAAAGTTATTTCTCGCCTTGAAACTTTTATAAACTTTAATCATGGTTCATGAAAGGGAAATGATCACACACGGAGATCCTGAGGATGAAGCTCcagcagaggaggaggagccggaggaggtggaggaggaagaagaggaggaagaggaaatggTGgttgCACACAAGCTCTTCAGTTCATTAAAATGAGTTACACTACACCCTGCCTCACTGTTACATACACTTTAATCAGGAAGCATCTTTATCTGTGACAAATTAAAATTGTACATGTCAGTATGAATAAAAATTTATggacat
>XM_026946130.2
aagctaataaacTACTTCCGGTGAATTTCTAGCAACTTCCTGCGTGTGACCTCCACTTGCGGAGTGCGCGATTAAAAAGTTATTTCTCGCCTTGAAACTTTTATAAACTTTAATCATGGTTCATGAAAGGGAAATGATCACACACGGAGATCCTGAGGATGAAGCTCcagcagaggaggaggagccggaggaggtggaggaggaagaagaggaggaagaggaaatggTGGACCCGTTAGAGACGGTGAGACAGAAGTGTGAGGAGACGGAGCACTGCGTACACACACGGCACAGGCTGGAGGCGTGTGAAGCTCGTGTGAACTCGCggtcacacacacaggaagactGCACTGAGGAACTGTTTGACTTCCTGCATGCACGAGAGCACTGTgttgCACACAAGCTCTTCAGTTCATTAAAATGAGTTACACTACACCCTGCCTCACTGTTACATACACTTTAATCAGGAAGCATCTTTATCTGTGACAAATTAAAATTGTACATGTCAGTATGAATAAAAATTTATggacattaaatttttttaataagcaaatTGTACTGTATTTCCAATTTATTCCATTAGCCCACTTTATGGTAAAGTTTCCTTTACACAAATTGTTTAGCTGGAAACACACCTGAATAAATATCGCAACTTgtctaaagaaataaaaagcagaATATTAACATGTA

Function

GO:

id name namespace
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process
GO:0006810 transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0008121 ubiquinol-cytochrome-c reductase activity molecular_function

KEGG:

id description
K00416 QCR6, UQCRH; ubiquinol-cytochrome c reductase subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
TU382511 False 351 lncRNA 0.42 3 19313879 19316048
XM_026946130.2 True 690 mRNA 0.42 4 19313860 19316206

Neighbor

gene id symbol gene type direction distance location
dmbx1a dmbx1,dmbx1a,LOC107588924,LOC107743378,LOC107684938,LOC107551711,LOC107700538 coding upstream 16597 19284612 ~ 19297263 (+)
wls wls coding upstream 126228 19163675 ~ 19187632 (+)
scinlb LOC108280481,LOC108436067,LOC107588891,LOC107700536,LOC107658127,LOC107568091,LOC107743367,LOC106598932 coding upstream 153717 19143608 ~ 19160143 (+)
ccdc18 ccdc18 coding upstream 177079 19110288 ~ 19136781 (+)
mtf2 mtf2,LOC107743365,LOC107568093 coding upstream 207711 19094922 ~ 19106149 (+)
ptger4c LOC108280834 coding downstream 40206 19356412 ~ 19361261 (+)
glula LOC108280762,LOC107563291,LOC107677515,LOC107710552,LOC107700548 coding downstream 741381 20057587 ~ 20062476 (+)
elovl1a LOC108280856,LOC108438881,LOC103047025,LOC107553254,LOC107732201,LOC107700551 coding downstream 822738 20138944 ~ 20150410 (+)
cc2d1b LOC108280309,LOC107553237 coding downstream 841112 20157318 ~ 20180634 (+)
zgc:110269 LOC108280318 coding downstream 1153319 20469525 ~ 20476964 (+)
G322957 NA non-coding upstream 204526 19107386 ~ 19109334 (+)
G322817 mrpl37 non-coding upstream 319237 18993758 ~ 18994623 (+)
G322802 NA non-coding upstream 354541 18959083 ~ 18959319 (+)
G322747 NA non-coding upstream 499043 18814614 ~ 18814817 (+)
G322746 NA non-coding upstream 501012 18812503 ~ 18812848 (+)
G323104 NA non-coding downstream 118024 19434230 ~ 19438075 (+)
G323168 NA non-coding downstream 196518 19512724 ~ 19523033 (+)
G323206 LOC107743377 non-coding downstream 266111 19582317 ~ 19583323 (+)
G323240 NA non-coding downstream 327617 19643823 ~ 19644570 (+)
G323249 NA non-coding downstream 344410 19660616 ~ 19661232 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 93631 19204658 ~ 19220229 (+)
ssbp3a ssbp3,ssbp3a other upstream 328778 18944698 ~ 18985082 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other upstream 442500 18816009 ~ 18871360 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 883838 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 1086627 18225921 ~ 18227233 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 813047 20129253 ~ 20281067 (+)
G323534 NA other downstream 1122496 20438702 ~ 20440561 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other downstream 1321378 20637584 ~ 20663819 (+)
G323615 NA other downstream 1704983 21021189 ~ 21157280 (+)

Expression


Co-expression Network