G323007


Basic Information

Item Value
gene id G323007
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19055487 ~ 19066748 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU382523
AGGAGCATCAGAAGGGACGTGGTGGGGTGAGAGACGTGGAGACGTGCAGGAGGAGCTGATGGACACACAGTTTAGAGGAACACGCCCAGCTACAAATGTGCTGCAGCTACAAACACGCTGAAGCCATCACACACGTCCAGAGAGAACGTCTGCAGGAAGTGACTCCGAAGAACCTGCGCAGTTCTGTCCTGTATCTCGGAGGAAGAGCAGCTAAAGATTTGCAGTGTTTCCCGGCATGTGGAAGCGGTGACCCCGTCTCCTCTGCGTCCATCCAGTGACACCTGAGAGTAGATGGCACTAACTAGCTCCCTTGGTCTCTCATAGCGTGTGGTGTTTATAGAGATTGTGgaattatcttttttaaaagtttgtcACGTACTTGTATTGCAACTTAACTTTCTC

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU382523 True 402 lncRNA 0.50 3 19055487 19066748

Neighbor

gene id symbol gene type direction distance location
gfi1aa LOC108280759 coding downstream 2345 19043896 ~ 19053142 (-)
glmna glmn coding downstream 27604 19016482 ~ 19027883 (-)
acot11a acot11 coding downstream 106171 18936784 ~ 18949316 (-)
tyw3 tyw3 coding downstream 137323 18914202 ~ 18918164 (-)
lhx8a lhx8,lhx8a,LOC108436043 coding downstream 172361 18873115 ~ 18883126 (-)
dipk1aa LOC108280758,LOC108436064 coding upstream 11975 19078723 ~ 19091689 (-)
LOC113546473 NA coding upstream 123566 19190314 ~ 19197494 (-)
gadd45aa gadd45a,gadd45aa,LOC108280806,LOC107716939,LOC107743369,LOC107700510,LOC107684937 coding upstream 160002 19226750 ~ 19229596 (-)
nsun4 nsun4 coding upstream 243402 19310150 ~ 19313674 (-)
pif1 pif1,LOC107551719,LOC104945614,LOC107700539 coding upstream 249890 19316638 ~ 19330869 (-)
G322889 NA non-coding downstream 98870 18942578 ~ 18956617 (-)
G322849 NA non-coding downstream 243110 18812010 ~ 18812377 (-)
G322831 NA non-coding downstream 290488 18764759 ~ 18764999 (-)
G322827 NA non-coding downstream 298840 18756373 ~ 18756647 (-)
LOC117599933 NA non-coding downstream 570007 18474224 ~ 18485480 (-)
LOC117600001 NA non-coding upstream 131312 19198060 ~ 19204380 (-)
G323088 NA non-coding upstream 151095 19217843 ~ 19220218 (-)
LOC117599938 NA non-coding upstream 163606 19230354 ~ 19275396 (-)
G323092 NA non-coding upstream 247763 19314511 ~ 19315470 (-)
G323298 NA non-coding upstream 319483 19386231 ~ 19386432 (-)
tceanc2 tceanc2 other downstream 49108 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 60851 18985173 ~ 18994636 (-)
G322826 NA other downstream 299894 18753772 ~ 18755593 (-)
G322538 NA other downstream 660664 18394249 ~ 18394823 (-)
LOC113546399 LOC108280496,LOC108430154 other downstream 1183379 17853847 ~ 17872108 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other upstream 8252 19075000 ~ 19077917 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other upstream 409364 19476112 ~ 19507197 (-)
G323726 NA other upstream 1128546 20195294 ~ 20195672 (-)
LOC113546371 NA other upstream 1317453 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 1395267 20462015 ~ 20469569 (-)

Expression


Co-expression Network