G323298


Basic Information

Item Value
gene id G323298
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19386231 ~ 19386432 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU382869
AACCTTAACCTCTGAGCTAGCACAAATTAATGTTACTCATCAACATCAGCAAAATCCATCAggtttgtacatttgtatttagTCACAGTCAGGCCCTTGAGCAGTTGCTGCTGTTTTTCAACATCTTATGTAGCAGAGTTAACTCCTGGAGCAAGGGTTGTACACCGTCTACTAGGGCACATGCTCCACTTTTCAACATGCT

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0051180 vitamin transport biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU382869 True 202 lncRNA 0.42 1 19386231 19386432

Neighbor

gene id symbol gene type direction distance location
LOC113546452 LOC108280527 coding downstream 1914 19364746 ~ 19384317 (-)
pif1 pif1,LOC107551719,LOC104945614,LOC107700539 coding downstream 55362 19316638 ~ 19330869 (-)
nsun4 nsun4 coding downstream 72557 19310150 ~ 19313674 (-)
gadd45aa gadd45a,gadd45aa,LOC108280806,LOC107716939,LOC107743369,LOC107700510,LOC107684937 coding downstream 156635 19226750 ~ 19229596 (-)
LOC113546473 NA coding downstream 188737 19190314 ~ 19197494 (-)
st3gal3b LOC108280530 coding upstream 6821 19393253 ~ 19456415 (-)
ptprfb ptprfb,LOC108280478 coding upstream 126290 19512722 ~ 19668895 (-)
pbx1a pbx1a,LOC103479586,LOC104918287,LOC103143038,LOC107083372,LOC103396165,LOC101069707,LOC108438878,LOC100704482,LOC108280905,LOC106929027,LOC107732204 coding upstream 522677 19909109 ~ 19985267 (-)
tmem275 LOC108280259 coding upstream 719540 20105972 ~ 20110891 (-)
kncn kncn,LOC107700491,LOC107710543 coding upstream 724938 20111370 ~ 20121708 (-)
G323092 NA non-coding downstream 70761 19314511 ~ 19315470 (-)
LOC117599938 NA non-coding downstream 110835 19230354 ~ 19275396 (-)
G323088 NA non-coding downstream 166013 19217843 ~ 19220218 (-)
LOC117600001 NA non-coding downstream 181851 19198060 ~ 19204380 (-)
G323007 NA non-coding downstream 319483 19055487 ~ 19066748 (-)
G323303 NA non-coding upstream 4725 19391157 ~ 19391357 (-)
G323308 NA non-coding upstream 51791 19438223 ~ 19493730 (-)
G323327 NA non-coding upstream 215677 19602109 ~ 19602336 (-)
LOC117599987 NA non-coding upstream 424036 19810468 ~ 19814211 (-)
LOC117599996 NA non-coding upstream 428782 19815214 ~ 19817065 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 308314 19075000 ~ 19077917 (-)
tceanc2 tceanc2 other downstream 379852 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 391595 18985173 ~ 18994636 (-)
G322826 NA other downstream 630638 18753772 ~ 18755593 (-)
G322538 NA other downstream 991408 18394249 ~ 18394823 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other upstream 89680 19476112 ~ 19507197 (-)
G323726 NA other upstream 808862 20195294 ~ 20195672 (-)
LOC113546371 NA other upstream 997769 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 1075583 20462015 ~ 20469569 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 1279859 20666291 ~ 20714017 (-)

Expression


Co-expression Network