G323303


Basic Information

Item Value
gene id G323303
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19391157 ~ 19391357 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU382876
CTTTCTTGTTGGAGTTGGAACCAAAACCAGTAGTTGAAAAAGATGTGCAGACTTGAATATGTCCATCAGCTAGCAAGAACCCAAACAAGCACCACCACAAATTTTCTAATGACCTTACCGTAGTCTAAACCACATTTCCCCAATCCAGCCATCAGGAAACTGCCAGATGGTCCACATTTTTGCCAGAACCAAGCAATCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU382876 True 201 lncRNA 0.43 1 19391157 19391357

Neighbor

gene id symbol gene type direction distance location
LOC113546452 LOC108280527 coding downstream 6840 19364746 ~ 19384317 (-)
pif1 pif1,LOC107551719,LOC104945614,LOC107700539 coding downstream 60288 19316638 ~ 19330869 (-)
nsun4 nsun4 coding downstream 77483 19310150 ~ 19313674 (-)
gadd45aa gadd45a,gadd45aa,LOC108280806,LOC107716939,LOC107743369,LOC107700510,LOC107684937 coding downstream 161561 19226750 ~ 19229596 (-)
LOC113546473 NA coding downstream 193663 19190314 ~ 19197494 (-)
st3gal3b LOC108280530 coding upstream 1896 19393253 ~ 19456415 (-)
ptprfb ptprfb,LOC108280478 coding upstream 121365 19512722 ~ 19668895 (-)
pbx1a pbx1a,LOC103479586,LOC104918287,LOC103143038,LOC107083372,LOC103396165,LOC101069707,LOC108438878,LOC100704482,LOC108280905,LOC106929027,LOC107732204 coding upstream 517752 19909109 ~ 19985267 (-)
tmem275 LOC108280259 coding upstream 714615 20105972 ~ 20110891 (-)
kncn kncn,LOC107700491,LOC107710543 coding upstream 720013 20111370 ~ 20121708 (-)
G323298 NA non-coding downstream 4725 19386231 ~ 19386432 (-)
G323092 NA non-coding downstream 75687 19314511 ~ 19315470 (-)
LOC117599938 NA non-coding downstream 115761 19230354 ~ 19275396 (-)
G323088 NA non-coding downstream 170939 19217843 ~ 19220218 (-)
LOC117600001 NA non-coding downstream 186777 19198060 ~ 19204380 (-)
G323308 NA non-coding upstream 46866 19438223 ~ 19493730 (-)
G323327 NA non-coding upstream 210752 19602109 ~ 19602336 (-)
LOC117599987 NA non-coding upstream 419111 19810468 ~ 19814211 (-)
LOC117599996 NA non-coding upstream 423857 19815214 ~ 19817065 (-)
G323706 NA non-coding upstream 730413 20121770 ~ 20180561 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 313240 19075000 ~ 19077917 (-)
tceanc2 tceanc2 other downstream 384778 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 396521 18985173 ~ 18994636 (-)
G322826 NA other downstream 635564 18753772 ~ 18755593 (-)
G322538 NA other downstream 996334 18394249 ~ 18394823 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other upstream 84755 19476112 ~ 19507197 (-)
G323726 NA other upstream 803937 20195294 ~ 20195672 (-)
LOC113546371 NA other upstream 992844 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 1070658 20462015 ~ 20469569 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 1274934 20666291 ~ 20714017 (-)

Expression


Co-expression Network