G323327


Basic Information

Item Value
gene id G323327
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19602109 ~ 19602336 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU382911
gagctgctgttacaccttctgaccaatcacagtccagaaAGTGTTACAATTTAAACACCTTAacatcggtgtgtgtgtgtgtgtgtgatgtttccATTGTATTTGTCGATTCACAcgttctctctcactctgtgtttcTCACTTTTGCCTTCATCAATTTaacctccatctctccatctgctCATAAACTCACCTCTCAGATCCGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU382911 True 207 lncRNA 0.43 2 19602109 19602336

Neighbor

gene id symbol gene type direction distance location
st3gal3b LOC108280530 coding downstream 145694 19393253 ~ 19456415 (-)
LOC113546452 LOC108280527 coding downstream 217792 19364746 ~ 19384317 (-)
pif1 pif1,LOC107551719,LOC104945614,LOC107700539 coding downstream 271240 19316638 ~ 19330869 (-)
nsun4 nsun4 coding downstream 288435 19310150 ~ 19313674 (-)
gadd45aa gadd45a,gadd45aa,LOC108280806,LOC107716939,LOC107743369,LOC107700510,LOC107684937 coding downstream 372513 19226750 ~ 19229596 (-)
pbx1a pbx1a,LOC103479586,LOC104918287,LOC103143038,LOC107083372,LOC103396165,LOC101069707,LOC108438878,LOC100704482,LOC108280905,LOC106929027,LOC107732204 coding upstream 306773 19909109 ~ 19985267 (-)
tmem275 LOC108280259 coding upstream 503636 20105972 ~ 20110891 (-)
kncn kncn,LOC107700491,LOC107710543 coding upstream 509034 20111370 ~ 20121708 (-)
cdc20 cdc20,LOC107732200,LOC107553255,LOC107700550,LOC107563294,LOC107710546,LOC107677877 coding upstream 548681 20151017 ~ 20157238 (-)
zfyve9a zfyve9,LOC108280307 coding upstream 583702 20186038 ~ 20211147 (-)
G323308 NA non-coding downstream 108379 19438223 ~ 19493730 (-)
G323303 NA non-coding downstream 210752 19391157 ~ 19391357 (-)
G323298 NA non-coding downstream 215677 19386231 ~ 19386432 (-)
G323092 NA non-coding downstream 286639 19314511 ~ 19315470 (-)
LOC117599938 NA non-coding downstream 326713 19230354 ~ 19275396 (-)
LOC117599987 NA non-coding upstream 208132 19810468 ~ 19814211 (-)
LOC117599996 NA non-coding upstream 212878 19815214 ~ 19817065 (-)
G323706 NA non-coding upstream 519434 20121770 ~ 20180561 (-)
G323709 NA non-coding upstream 526917 20129253 ~ 20185132 (-)
LOC117599978 NA non-coding upstream 768228 20370564 ~ 20376314 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other downstream 94912 19476112 ~ 19507197 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 524192 19075000 ~ 19077917 (-)
tceanc2 tceanc2 other downstream 595730 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 607473 18985173 ~ 18994636 (-)
G322826 NA other downstream 846516 18753772 ~ 18755593 (-)
G323726 NA other upstream 592958 20195294 ~ 20195672 (-)
LOC113546371 NA other upstream 781865 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 859679 20462015 ~ 20469569 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 1063955 20666291 ~ 20714017 (-)
G323902 NA other upstream 1225690 20828026 ~ 20830104 (-)

Expression


Co-expression Network