G323471


Basic Information

Item Value
gene id G323471
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20242618 ~ 20303253 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383098
gagagagagagagagagagagggagagagagagagagagagagagagagagagagagagagagagagagagagaggaatgttactgttaccattccacagttgattatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383098 True 111 lncRNA 0.45 2 20242618 20303253

Neighbor

gene id symbol gene type direction distance location
cc2d1b LOC108280309,LOC107553237 coding upstream 61984 20157318 ~ 20180634 (+)
elovl1a LOC108280856,LOC108438881,LOC103047025,LOC107553254,LOC107732201,LOC107700551 coding upstream 92208 20138944 ~ 20150410 (+)
glula LOC108280762,LOC107563291,LOC107677515,LOC107710552,LOC107700548 coding upstream 180142 20057587 ~ 20062476 (+)
ptger4c LOC108280834 coding upstream 881357 19356412 ~ 19361261 (+)
dmbx1a dmbx1,dmbx1a,LOC107588924,LOC107743378,LOC107684938,LOC107551711,LOC107700538 coding upstream 945355 19284612 ~ 19297263 (+)
zgc:110269 LOC108280318 coding downstream 166272 20469525 ~ 20476964 (+)
lifra LOC108255632 coding downstream 202431 20505684 ~ 20525922 (+)
spef2 spef2 coding downstream 228747 20532000 ~ 20572338 (+)
atr atr,LOC107677746,LOC107700496 coding downstream 269309 20572562 ~ 20589458 (+)
amer3 amer3 coding downstream 289613 20592866 ~ 20602531 (+)
G323358 NA non-coding upstream 328603 19847999 ~ 19914015 (+)
G323249 NA non-coding upstream 581386 19660616 ~ 19661232 (+)
G323240 NA non-coding upstream 598048 19643823 ~ 19644570 (+)
G323206 LOC107743377 non-coding upstream 659295 19582317 ~ 19583323 (+)
G323168 NA non-coding upstream 719585 19512724 ~ 19523033 (+)
G323499 NA non-coding downstream 15704 20318957 ~ 20393150 (+)
G323486 NA non-coding downstream 29352 20332605 ~ 20353169 (+)
G323500 NA non-coding downstream 56714 20359967 ~ 20393712 (+)
G323502 NA non-coding downstream 59048 20362301 ~ 20395689 (+)
G323501 NA non-coding downstream 73680 20376933 ~ 20398720 (+)
LOC113546339 NA other upstream 926412 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1022389 19204658 ~ 19220229 (+)
ssbp3a ssbp3,ssbp3a other upstream 1257536 18944698 ~ 18985082 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other upstream 1371258 18816009 ~ 18871360 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 1812596 18394023 ~ 18430022 (+)
G323534 NA other downstream 135449 20438702 ~ 20440561 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other downstream 334331 20637584 ~ 20663819 (+)
G323615 NA other downstream 717936 21021189 ~ 21157280 (+)

Expression


Co-expression Network