G323485


Basic Information

Item Value
gene id G323485
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20267711 ~ 20335698 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383113
ttttttttttttaatacaaaaaaaaaaaaatggatCAATTCAGTTTTCAGAAGTCGCTACAAACATGTCGGATGCCTCCAGAGCGAGCCTCTGGACTGGAGGTCCATGTTTAAGGCGCGGATGGTGTCGGATTCACCGGGAAACTGAAGCGCGCTGCTCTGATTAAACACCGAGCTCTTCACCAGCCATTCGCTCCCCTTCAGtcccacatacacactcacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383113 True 229 lncRNA 0.47 2 20267711 20335698

Neighbor

gene id symbol gene type direction distance location
cc2d1b LOC108280309,LOC107553237 coding upstream 87077 20157318 ~ 20180634 (+)
elovl1a LOC108280856,LOC108438881,LOC103047025,LOC107553254,LOC107732201,LOC107700551 coding upstream 117301 20138944 ~ 20150410 (+)
glula LOC108280762,LOC107563291,LOC107677515,LOC107710552,LOC107700548 coding upstream 205235 20057587 ~ 20062476 (+)
ptger4c LOC108280834 coding upstream 906450 19356412 ~ 19361261 (+)
dmbx1a dmbx1,dmbx1a,LOC107588924,LOC107743378,LOC107684938,LOC107551711,LOC107700538 coding upstream 970448 19284612 ~ 19297263 (+)
zgc:110269 LOC108280318 coding downstream 133827 20469525 ~ 20476964 (+)
lifra LOC108255632 coding downstream 169986 20505684 ~ 20525922 (+)
spef2 spef2 coding downstream 196302 20532000 ~ 20572338 (+)
atr atr,LOC107677746,LOC107700496 coding downstream 236864 20572562 ~ 20589458 (+)
amer3 amer3 coding downstream 257168 20592866 ~ 20602531 (+)
G323358 NA non-coding upstream 353696 19847999 ~ 19914015 (+)
G323249 NA non-coding upstream 606479 19660616 ~ 19661232 (+)
G323240 NA non-coding upstream 623141 19643823 ~ 19644570 (+)
G323206 LOC107743377 non-coding upstream 684388 19582317 ~ 19583323 (+)
G323168 NA non-coding upstream 744678 19512724 ~ 19523033 (+)
G323500 NA non-coding downstream 24269 20359967 ~ 20393712 (+)
G323502 NA non-coding downstream 26603 20362301 ~ 20395689 (+)
G323501 NA non-coding downstream 41235 20376933 ~ 20398720 (+)
G323504 NA non-coding downstream 44499 20380197 ~ 20417484 (+)
G323524 NA non-coding downstream 81874 20417572 ~ 20442370 (+)
LOC113546339 NA other upstream 951505 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1047482 19204658 ~ 19220229 (+)
ssbp3a ssbp3,ssbp3a other upstream 1282629 18944698 ~ 18985082 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other upstream 1396351 18816009 ~ 18871360 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 1837689 18394023 ~ 18430022 (+)
G323534 NA other downstream 103004 20438702 ~ 20440561 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other downstream 301886 20637584 ~ 20663819 (+)
G323615 NA other downstream 685491 21021189 ~ 21157280 (+)

Expression


Co-expression Network