G323524


Basic Information

Item Value
gene id G323524
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20417572 ~ 20442370 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383166
tacagttctgtgcaaaagtcttagtcacgtgtaaagaaatgctgtagagtaaagacgccttcaaaaataatgaaattaaatgtttctacatttaaaaaaaaatcctataaagagcagtaaacagtaataaatgaaacaaagtcaatatttaatgtgacgatccttcgctttaaataaataaagcagtatctgaggtgcagtgtgtgcagttttataaggaaatgagctggaagtgttactgagcatcttgcagaagcagccacagttcttctggagactttgactgtctttgactgtcgactcgcttcttatttctgcagcttaaacccagcagccttcattatgtttttatctgaa

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU383166 True 357 lncRNA 0.35 3 20417572 20442370

Neighbor

gene id symbol gene type direction distance location
cc2d1b LOC108280309,LOC107553237 coding upstream 236938 20157318 ~ 20180634 (+)
elovl1a LOC108280856,LOC108438881,LOC103047025,LOC107553254,LOC107732201,LOC107700551 coding upstream 267162 20138944 ~ 20150410 (+)
glula LOC108280762,LOC107563291,LOC107677515,LOC107710552,LOC107700548 coding upstream 355096 20057587 ~ 20062476 (+)
ptger4c LOC108280834 coding upstream 1056311 19356412 ~ 19361261 (+)
dmbx1a dmbx1,dmbx1a,LOC107588924,LOC107743378,LOC107684938,LOC107551711,LOC107700538 coding upstream 1120309 19284612 ~ 19297263 (+)
zgc:110269 LOC108280318 coding downstream 27155 20469525 ~ 20476964 (+)
lifra LOC108255632 coding downstream 63314 20505684 ~ 20525922 (+)
spef2 spef2 coding downstream 89630 20532000 ~ 20572338 (+)
atr atr,LOC107677746,LOC107700496 coding downstream 130192 20572562 ~ 20589458 (+)
amer3 amer3 coding downstream 150496 20592866 ~ 20602531 (+)
G323504 NA non-coding upstream 88 20380197 ~ 20417484 (+)
G323501 NA non-coding upstream 18852 20376933 ~ 20398720 (+)
G323502 NA non-coding upstream 21883 20362301 ~ 20395689 (+)
G323500 NA non-coding upstream 23860 20359967 ~ 20393712 (+)
G323499 NA non-coding upstream 24422 20318957 ~ 20393150 (+)
G323536 NA non-coding downstream 7603 20449973 ~ 20450892 (+)
LOC117599946 NA non-coding downstream 34602 20476972 ~ 20478345 (+)
G323553 NA non-coding downstream 86135 20528505 ~ 20604192 (+)
G323574 NA non-coding downstream 209863 20652233 ~ 20653361 (+)
G323576 NA non-coding downstream 227315 20669685 ~ 20670160 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other upstream 136505 20129253 ~ 20281067 (+)
LOC113546339 NA other upstream 1101366 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1197343 19204658 ~ 19220229 (+)
ssbp3a ssbp3,ssbp3a other upstream 1432490 18944698 ~ 18985082 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other upstream 1546212 18816009 ~ 18871360 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other downstream 195214 20637584 ~ 20663819 (+)
G323615 NA other downstream 578819 21021189 ~ 21157280 (+)

Expression


Co-expression Network