G323534


Basic Information

Item Value
gene id G323534
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20438702 ~ 20440561 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383181
GTTGTTCTCGAGGCCTTCGATAACCTCGATGCCGTTGTGACTCAGGTAGAGCTCCTTCAGGTTCCCCAGGTTCTGCAGTCCCTCTAGTTTGGTGATGCGATTGCTCTgcgtgaaggaggaggaggaggagaggtcAGACGGAGGAACGGCGCAGACACGCGTGTACGAGCGGCGAGTCATCATGAGCGTGAGCGTTAGGACGTACCTGGATGCTGAGGACCGTCAGGTTGTGGAGGCCGTCCAGGTTCTGCAGCTGAGTGATCTTATTCGTGCCGAGGAACAAACTGTCCAGAGAAGTGAGCGCGTCCAGGTTCTCGATGATCTAGAAGGAAGGAACACGGGGGGACttgaggagaaggagaagaagcgCTGTGCTCACAACATTTTTAACCCGATTACTTTaagatgatgtcatcagtgtgcGCCGcctgctcctcctcttccttcttctcctcctgaGCTGCTTGGAATTTACAGCCGTCATCTcagttaaaatgataaaaaggatcaaaacaaaataaattatttaattaatatttttaattaattatattttaattaattataaaatattgaagCTATGGATTTTTCACGACTCATTTAAACGAGTGCACAAAAATGACTAAAGATaagaataatttttataaattaatcacTGCAGACTTCAGCGCAATGGGTTAATAtagcaggaggaggaggcgcacactgatgacatcaccACCCTGCGACAGATGTAAAGCAATGGCTCTATTTGCAGTGCGAAGCTGCGTGCGAGAAGAAAAGGCGCACGATGATGACGCCGTCTAGCTGCGattgatttcaattttttatgaACACAAATGCTACATGTGGGAGGAGAAAGAGGCGCAGACTGATGACATCATCTTGCTGTTACTGATCCTAAgcaatttagtttttttttaaaaaaaatttatgaacAGCAGCGCAAAGCTGCATGTGATAGGAAGAGGAAAAGATGGCgcacactgatgacatcatgTATCATAGGGAGACGTTCCTGACAGACCAGTTTGAATGACCGCTAATTAAACAGGTAAagtcaggtgtggctcctgatTGGCTAAAATGACAACGTCTGGTTGGGTTAGGAACTTCAGTAGGAACCTCAGTAGGAACCTGAAGAAACCAGGCGTCACAGGCACGAACGCTCCGCTCACCCTGATGCGATTGGACCCGAGCTCCAGCATGTGAAGGCCAGTGAGGTTTTCGAGGTTGGCGATGTTCGTGATCTTGTTGTGCAGCAGGAAGAGTTTCTTCAGCTTCGTCAGACGCTCCAGACCTTCGATCTTCCTCAGCAGGTTGAACGATACGTCTAGCTGCCTGTCGCGGATTCACACAGAGCCGAAAACATCAGCACGTCGCTCCAGGaataacatcaaacatcatgCAGATGTtataaattgaataaaacagatatttaaaaaaatttctgcCCGACattatatgtgtgtaaaatcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagactcactcGAGCTCGGTTAAAGCCTGCAGGTTCTCCAGCTTGCGGATCTGGTTGTCGTACAGGTCCAGTTCCCTCAGCGAGACCAGGCTCTCCAGGTTCTCTATCTTTTTAATCAGGTTTTGTCTGAGAGAAAGCGTCTGACGGCAAACACAGACGAGAGGTCGTGATGTGTCTGTTACAGGATCGCCATGTGTCGTGATAACGTTTTGAATCGTGACCTTACCTTGGCTTTCTGCAAGACCTCAAGTCCCTCGATCTTCCCGATCCGACAGTGGACCAGATCCACGTCCTGAGAGGATAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383181 True 1840 TUCP 0.47 2 20438702 20440561

Neighbor

gene id symbol gene type direction distance location
cc2d1b LOC108280309,LOC107553237 coding upstream 258068 20157318 ~ 20180634 (+)
elovl1a LOC108280856,LOC108438881,LOC103047025,LOC107553254,LOC107732201,LOC107700551 coding upstream 288292 20138944 ~ 20150410 (+)
glula LOC108280762,LOC107563291,LOC107677515,LOC107710552,LOC107700548 coding upstream 376226 20057587 ~ 20062476 (+)
ptger4c LOC108280834 coding upstream 1077441 19356412 ~ 19361261 (+)
dmbx1a dmbx1,dmbx1a,LOC107588924,LOC107743378,LOC107684938,LOC107551711,LOC107700538 coding upstream 1141439 19284612 ~ 19297263 (+)
zgc:110269 LOC108280318 coding downstream 28964 20469525 ~ 20476964 (+)
lifra LOC108255632 coding downstream 65123 20505684 ~ 20525922 (+)
spef2 spef2 coding downstream 91439 20532000 ~ 20572338 (+)
atr atr,LOC107677746,LOC107700496 coding downstream 132001 20572562 ~ 20589458 (+)
amer3 amer3 coding downstream 152305 20592866 ~ 20602531 (+)
G323504 NA non-coding upstream 21218 20380197 ~ 20417484 (+)
G323501 NA non-coding upstream 39982 20376933 ~ 20398720 (+)
G323502 NA non-coding upstream 43013 20362301 ~ 20395689 (+)
G323500 NA non-coding upstream 44990 20359967 ~ 20393712 (+)
G323499 NA non-coding upstream 45552 20318957 ~ 20393150 (+)
G323536 NA non-coding downstream 9412 20449973 ~ 20450892 (+)
LOC117599946 NA non-coding downstream 36411 20476972 ~ 20478345 (+)
G323553 NA non-coding downstream 87944 20528505 ~ 20604192 (+)
G323574 NA non-coding downstream 211672 20652233 ~ 20653361 (+)
G323576 NA non-coding downstream 229124 20669685 ~ 20670160 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other upstream 157635 20129253 ~ 20281067 (+)
LOC113546339 NA other upstream 1122496 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1218473 19204658 ~ 19220229 (+)
ssbp3a ssbp3,ssbp3a other upstream 1453620 18944698 ~ 18985082 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other upstream 1567342 18816009 ~ 18871360 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other downstream 197023 20637584 ~ 20663819 (+)
G323615 NA other downstream 580628 21021189 ~ 21157280 (+)

Expression


Co-expression Network