G323577


Basic Information

Item Value
gene id G323577
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20671728 ~ 20672454 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383242
TTATAAACCGATAAAAGGTGTGACGTGTCGCTCAGTAATAATCGCTGATGAATCACAGaggtgtaagtggaataacacgctCCAGAACAtgcttttataagaaaataacactCTTCGGTTCTAGTTCCGCATCACAGCGCAGTCTgccgtgtgttattccttacatattaaaCATAAGCAGAGTTAGATAGCTAGTTAAGAGCGTTAGTACAGATTAAGTGCGTTAATACAGATTAAGTGCGTTAATACAGATTAAGTGCGTTAGTACAGATTAAGTGCGTTAGTACAGATTAAGTGCGTTAATACAGATTAAGTGCGTTAGTACAGATTAAGTGCGTTAATACAGATTAAGTGCGTTAGTACAGATTAAGTGCGTTAGTACAGATTAAGTGCGTTAGTACAGATTAAGTGCGTTAGTACAGATTAAGTGCGTTAGTACAGATTAAGTGCGTTAGTACAGATTAAGTGCGTTAGTACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383242 True 479 lncRNA 0.37 2 20671728 20672454

Neighbor

gene id symbol gene type direction distance location
amer3 amer3 coding upstream 69197 20592866 ~ 20602531 (+)
atr atr,LOC107677746,LOC107700496 coding upstream 82270 20572562 ~ 20589458 (+)
spef2 spef2 coding upstream 99390 20532000 ~ 20572338 (+)
lifra LOC108255632 coding upstream 145806 20505684 ~ 20525922 (+)
zgc:110269 LOC108280318 coding upstream 194764 20469525 ~ 20476964 (+)
col11a1b col11a1b,LOC107594685,LOC107680048,LOC107700498,LOC107564536,LOC107710593,LOC104931259 coding downstream 135173 20807627 ~ 20883606 (+)
tecrl2b LOC108280320 coding downstream 213806 20886260 ~ 20892997 (+)
trnap-ugg_22 NA coding downstream 242950 20915404 ~ 20915475 (+)
LOC113524959 LOC108280417 coding downstream 308295 20980749 ~ 20991604 (+)
LOC117595742 LOC108280410 coding downstream 453419 21125873 ~ 21127829 (+)
G323576 NA non-coding upstream 1568 20669685 ~ 20670160 (+)
G323574 NA non-coding upstream 18367 20652233 ~ 20653361 (+)
G323553 NA non-coding upstream 67536 20528505 ~ 20604192 (+)
LOC117599946 NA non-coding upstream 193383 20476972 ~ 20478345 (+)
G323536 NA non-coding upstream 220836 20449973 ~ 20450892 (+)
G323578 NA non-coding downstream 480 20672934 ~ 20705194 (+)
G323603 NA non-coding downstream 260778 20933232 ~ 20946079 (+)
G323624 NA non-coding downstream 295059 20967513 ~ 21024078 (+)
LOC117599988 NA non-coding downstream 351718 21024172 ~ 21024556 (+)
G323625 NA non-coding downstream 353967 21026421 ~ 21037720 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other upstream 7909 20637584 ~ 20663819 (+)
G323534 NA other upstream 231167 20438702 ~ 20440561 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other upstream 390661 20129253 ~ 20281067 (+)
LOC113546339 NA other upstream 1355522 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1451499 19204658 ~ 19220229 (+)
G323615 NA other downstream 348735 21021189 ~ 21157280 (+)

Expression


Co-expression Network