G323643


Basic Information

Item Value
gene id G323643
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21026825 ~ 21089934 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383340
CGCAGGTGAGTCAGCTGATCCTCCAGAGTGCCGTTCATCTCGATCGATATCCGCccgatctcctccaTCTTGTTCTGGATCCAGGGTCCCACCACGTTGGCCTGGTTGGCAAACTGGCGTCTCAGATGATCGTTAGACTGCTGACGGCCGAGCTCCTCCTGCAGAGCTCCATCACGCTGAGGAACCAGCTGCTGcggctgcacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383340 True 232 lncRNA 0.58 3 21026825 21089934

Neighbor

gene id symbol gene type direction distance location
LOC113524959 LOC108280417 coding upstream 35221 20980749 ~ 20991604 (+)
trnap-ugg_22 NA coding upstream 111350 20915404 ~ 20915475 (+)
tecrl2b LOC108280320 coding upstream 133828 20886260 ~ 20892997 (+)
col11a1b col11a1b,LOC107594685,LOC107680048,LOC107700498,LOC107564536,LOC107710593,LOC104931259 coding upstream 143219 20807627 ~ 20883606 (+)
amer3 amer3 coding upstream 424294 20592866 ~ 20602531 (+)
LOC117595742 LOC108280410 coding downstream 35939 21125873 ~ 21127829 (+)
LOC117599988 NA non-coding upstream 2269 21024172 ~ 21024556 (+)
G323624 NA non-coding upstream 2747 20967513 ~ 21024078 (+)
G323603 NA non-coding upstream 80746 20933232 ~ 20946079 (+)
G323578 NA non-coding upstream 321631 20672934 ~ 20705194 (+)
G323577 NA non-coding upstream 354371 20671728 ~ 20672454 (+)
G323669 NA non-coding downstream 15510 21105444 ~ 21119416 (+)
G323621 NA non-coding downstream 40299 21130233 ~ 21132361 (+)
G323676 NA non-coding downstream 43512 21133446 ~ 21134459 (+)
G323618 NA non-coding downstream 47979 21137913 ~ 21139687 (+)
trnap-ugg_23 NA non-coding downstream 52343 21142277 ~ 21142348 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other upstream 363006 20637584 ~ 20663819 (+)
G323534 NA other upstream 586264 20438702 ~ 20440561 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other upstream 745758 20129253 ~ 20281067 (+)
LOC113546339 NA other upstream 1710619 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1806596 19204658 ~ 19220229 (+)

Expression


Co-expression Network