G323644 (actn4,LOC108261236,LOC108440922,LOC107737420)


Basic Information

Item Value
gene id G323644
gene name actn4,LOC108261236,LOC108440922,LOC107737420
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21032878 ~ 21042418 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383341
GTGAGAAGTTGTCATgggagtgtttgtgtgtgtgtgtgtgtgtgtgtatatatacttgAGCTCCTGGGCGATGGCGGCGATCTGCTCCACACGGTCCTGGTGAGCAGCGAGGTCACTCTCAAACGCCTCGTGTTTCTTCAGCAGAGCTTTAATCTCAGACAGAGAAGCTGTCTCATAGTCCTTCTGATTCAACATGgcctccttaccttcTGTCCAGGCCTCATGTATAGCTGCTTTCTGTCGGAATTTCTCAGCGAGGTGGTCGAGTCTCTCCAGTCGGCGGATTTCATTCAGCAGCCACTCCTCATAGCCTTTCTCCGCCTCC

Function

symbol description
actn4 Predicted to enable actin binding activity and calcium ion binding activity. Is expressed in several structures, including digestive system; fin bud; nervous system; pericardial region; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis and focal segmental glomerulosclerosis 1. Orthologous to human ACTN4 (actinin alpha 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383341 True 325 lncRNA 0.52 3 21032878 21042418

Neighbor

gene id symbol gene type direction distance location
LOC113524959 LOC108280417 coding upstream 41274 20980749 ~ 20991604 (+)
trnap-ugg_22 NA coding upstream 117403 20915404 ~ 20915475 (+)
tecrl2b LOC108280320 coding upstream 139881 20886260 ~ 20892997 (+)
col11a1b col11a1b,LOC107594685,LOC107680048,LOC107700498,LOC107564536,LOC107710593,LOC104931259 coding upstream 149272 20807627 ~ 20883606 (+)
amer3 amer3 coding upstream 430347 20592866 ~ 20602531 (+)
LOC117595742 LOC108280410 coding downstream 83455 21125873 ~ 21127829 (+)
LOC117599988 NA non-coding upstream 8322 21024172 ~ 21024556 (+)
G323624 NA non-coding upstream 8800 20967513 ~ 21024078 (+)
G323603 NA non-coding upstream 86799 20933232 ~ 20946079 (+)
G323578 NA non-coding upstream 327684 20672934 ~ 20705194 (+)
G323577 NA non-coding upstream 360424 20671728 ~ 20672454 (+)
G323650 NA non-coding downstream 10904 21053322 ~ 21063269 (+)
G323659 NA non-coding downstream 28001 21070419 ~ 21088441 (+)
G323661 NA non-coding downstream 44526 21086944 ~ 21093378 (+)
G323669 NA non-coding downstream 63026 21105444 ~ 21119416 (+)
G323621 NA non-coding downstream 87815 21130233 ~ 21132361 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other upstream 369059 20637584 ~ 20663819 (+)
G323534 NA other upstream 592317 20438702 ~ 20440561 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other upstream 751811 20129253 ~ 20281067 (+)
LOC113546339 NA other upstream 1716672 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1812649 19204658 ~ 19220229 (+)

Expression


Co-expression Network