G323646


Basic Information

Item Value
gene id G323646
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21035025 ~ 21043991 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383346
gcgTGTTAGCTGGGGATTATCTGGGAAGGTGACATCACTCAGgtggtttaaacacacacacacacacacacacacagagtttgtgTTCAAGTTTgcatgtgctgatattcagttaTCGGAGAAATCACGATCCTCGCTGCAGGGTGCCGTACACAGGCCCTTACACTGGACTCGTGGTGAGAAGATTTCGGCGTCTCTGATCTAATTAAATAcgttaaattaatttaaaattagatACGCTCAAATTAAATAAGTTAACGAGTGCTGCAATGAGCTGAGACGCTGAGGGACGTCACTGCAGCACATTCGCGTGATTAATTACTACCCGAGTTCACTGAACGtgttcctgaagtgttttccgAGCAACTCGCTCATCATTTAACCAGCGTTTAAACCCAGAACTCTGTCAGTCACAGCGTGACGACGTTTCAGGTGTTTAATCTGAGCTGCTGTTGCTGCGTCTTTCCTGAAAGTCTGCTCAAAGGAAAAGTCGAGTGTGGTGCTGATGTAATGGCTGCTATACCCGGGATAAAGTCTCGCTGAGCAcggtagctagctaattagcctTTAAACAA
>TU383347
acacagagagagtgaggaacACCACatatcataaaacacacacacacacacacacacacacacacacacacacacacacacacacacactactcacatCACTGGCGAGTTTCTCGTAGTCCTCCATCAGGTGCTCGTTCTCCTGATTGACAGCAAGAACTTTGCAGATGCGATTGGCTGCAGTCTCGGCCTATCAGAAAGCAGAACACTCAGTGGTGTGTGAAGCACGTGACTGTCATTCctcacgtctcacacacacgcgtgcaccAGTAACCTGCGGTGAGGACGGCCAACACACCTGACCTACAGGTACACCTgctctacagtgtgtgtgtacactgacTAACGCTCTGCTTACTgcaaacacactgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgttagCTGGGGATTATCTGGGAAGGTGACATCACTCAGgtggtttaaacacacacacacacacacacacacacacagagtttgtgTTCAAGTTTgcatgtgctgatattcagttaTCGGAGAAATCACGATCCTCGCTGCAGGGTGCCGTACACAGGCCCTTACACTGGACTCGTGGTGAGAAGATTTCGGCGTCTCTGATCTAATTAAATAcgttaaattaatttaaaattagatACGCTCAAATTAAATAAGTTAACGAGTGCTGCAATGAGCTGAGACGCTGAGGGACGTCACTGCAGCACATTCGCGTGATTAATTACTACCCGAGTTCACTGAACGtgttcctgaagtgttttccgAGCAACTCGCTCATCATTTAACCAGCGTTTAAACCCAGAACTCTGTCAGTCACAGCGTGACGACGTTTCAGGTGTTTAATCTGAGCTGCTGTTGCTGCGTCTTTCCTGAAAGTCTGCTCAAAGGAAAAGTCGAGTGTGGTGCTGATGTAATGGCTGCTATACCCGGGATAAAGTCTCGCTGAGCAcggtagctagctaattagcctTTAAACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383346 False 575 lncRNA 0.45 2 21035025 21043991
TU383347 True 974 lncRNA 0.48 2 21042967 21043991

Neighbor

gene id symbol gene type direction distance location
LOC113524959 LOC108280417 coding upstream 43421 20980749 ~ 20991604 (+)
trnap-ugg_22 NA coding upstream 119550 20915404 ~ 20915475 (+)
tecrl2b LOC108280320 coding upstream 142028 20886260 ~ 20892997 (+)
col11a1b col11a1b,LOC107594685,LOC107680048,LOC107700498,LOC107564536,LOC107710593,LOC104931259 coding upstream 151419 20807627 ~ 20883606 (+)
amer3 amer3 coding upstream 432494 20592866 ~ 20602531 (+)
LOC117595742 LOC108280410 coding downstream 81882 21125873 ~ 21127829 (+)
LOC117599988 NA non-coding upstream 10469 21024172 ~ 21024556 (+)
G323624 NA non-coding upstream 10947 20967513 ~ 21024078 (+)
G323603 NA non-coding upstream 88946 20933232 ~ 20946079 (+)
G323578 NA non-coding upstream 329831 20672934 ~ 20705194 (+)
G323577 NA non-coding upstream 362571 20671728 ~ 20672454 (+)
G323650 NA non-coding downstream 9331 21053322 ~ 21063269 (+)
G323659 NA non-coding downstream 26428 21070419 ~ 21088441 (+)
G323661 NA non-coding downstream 42953 21086944 ~ 21093378 (+)
G323669 NA non-coding downstream 61453 21105444 ~ 21119416 (+)
G323621 NA non-coding downstream 86242 21130233 ~ 21132361 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other upstream 371206 20637584 ~ 20663819 (+)
G323534 NA other upstream 594464 20438702 ~ 20440561 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other upstream 753958 20129253 ~ 20281067 (+)
LOC113546339 NA other upstream 1718819 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1814796 19204658 ~ 19220229 (+)

Expression


Co-expression Network