G323650


Basic Information

Item Value
gene id G323650
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21053322 ~ 21063269 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383352
ctgccataatggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaccctcAGCTCCAATAGACACCAGTTTGACTCCTTTGCTGGCGATGAAGTCGAGAGCTTTGTTGACGTTGTTGATCTTGTGCACTCTCATCTTCCCTCTCTCGGGTTTGGGTAACCTCTCACCTaaacacacgcgcgcgcacacacacacacgcacgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383352 True 212 lncRNA 0.51 2 21053322 21063269

Neighbor

gene id symbol gene type direction distance location
LOC113524959 LOC108280417 coding upstream 61718 20980749 ~ 20991604 (+)
trnap-ugg_22 NA coding upstream 137847 20915404 ~ 20915475 (+)
tecrl2b LOC108280320 coding upstream 160325 20886260 ~ 20892997 (+)
col11a1b col11a1b,LOC107594685,LOC107680048,LOC107700498,LOC107564536,LOC107710593,LOC104931259 coding upstream 169716 20807627 ~ 20883606 (+)
amer3 amer3 coding upstream 450791 20592866 ~ 20602531 (+)
LOC117595742 LOC108280410 coding downstream 62604 21125873 ~ 21127829 (+)
G323647 NA non-coding upstream 7990 21036294 ~ 21045332 (+)
G323646 NA non-coding upstream 9331 21035025 ~ 21043991 (+)
G323644 actn4,LOC108261236,LOC108440922,LOC107737420 non-coding upstream 10904 21032878 ~ 21042418 (+)
G323625 NA non-coding upstream 15602 21026421 ~ 21037720 (+)
LOC117599988 NA non-coding upstream 28766 21024172 ~ 21024556 (+)
G323659 NA non-coding downstream 7150 21070419 ~ 21088441 (+)
G323661 NA non-coding downstream 23675 21086944 ~ 21093378 (+)
G323669 NA non-coding downstream 42175 21105444 ~ 21119416 (+)
G323621 NA non-coding downstream 66964 21130233 ~ 21132361 (+)
G323676 NA non-coding downstream 70177 21133446 ~ 21134459 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other upstream 389503 20637584 ~ 20663819 (+)
G323534 NA other upstream 612761 20438702 ~ 20440561 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other upstream 772255 20129253 ~ 20281067 (+)
LOC113546339 NA other upstream 1737116 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1833093 19204658 ~ 19220229 (+)

Expression


Co-expression Network