G323709


Basic Information

Item Value
gene id G323709
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20129253 ~ 20185132 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383429
aaaaaagtactggtTTTGGTTACACGATATACCAACATTAGCAttacaagctagctaacatgtaGCTATTATATTCTAACATTGAACAGTAGCTGGTGATGTCATATGAGCAAGCTGACGATTGGCCGATCAAATTGAgcttaagctccgcccctgCTGATGCAGGCGTGCCTGTCACTTGGGGAAAATCTTTGGCTAGTTTCTGAAAGTCTTGCTTAATTCGAACAAAACGTCTCAAATCCGCCTCCTTTCATTGGTTTTTGCActtaaccaatcagaaaccTTTCTGCTCGGGGGAGGGGAAAAGTCGCACAAGCCAGAGATGGTGTGAAAACAGGACGTCCTGCTCGGAgtgatttatttactattaGCTTTAATCACCAGATGCTTTATTTAAACAGTATGgaccttgtttttgtttgttttgtctttttttttttttttttttgtctgtaagtAAAATTCGTCCAAAGCCGAAGCGATGTAGCTTTCCGAGCTGAAGCGTCGGATCGGGAACGAACGTTGCGTGAGGACGACGTGTTCACGGAGTGACACATGGGTGGATGACGGTTACAGAGATGTTAATTAGCATTAAACGGAACCAAGTGCTTTTTGCGAATTTAACCCCAAACGGTTTTTAACGCATCCTTGTCCGCTTCCCCTAACGATTCCGAATCCCTGATTTCATGAAACAGATTTGGAAACAGATTTCCGAAGCAAATTTTAACATTTGCTCTAAATGCAGTTGTATCAGCTCGCTAATCTGCTACGAGAATCAGAAATTCTTTCTTAAGAATTGACTAACTTGCTAACCAGCTAGTTTGTATCCAGATCATGTATACCAGCTTGCTAGCTTGCTAAGTAGCTTGCTAATTGACAGTTTCCGTTAATCTAGATAGCAGTTTACTCACTAAGTGTCTCGCTAACTAGCTGGAATACCAGGTCATATTATGGCTTGCTAACTAGCTGGTTTGAGAAGTAAGTAGCTAGTGCAGAAatttgctagcttgctaaccaTTAGCAGAAATAGTAGAATTAAATATTCAAGCAGTTTCCATGAATCTGTATACAGAATTAAATCAAGCACTTACCATAGATCTACACCAGCTAATCAGCTTGCTAAATAGTTGCTTTGCTAACTAGCCAACATACTCATTAGCTAATTTTCTAGCCAGCTACCAGAATAAAAGTCCACCAGGTGTCATGGATAaactgatgatttaaaaaaacctgattCAGAAAATCAAAATCTGTTGTTCCAGGTTACACAGTCGGCCATTTTtttgcactgcattctgggtaaGTCTTGTCCATTAGGGATGAAGTGATGGAATGAGGGGAAGTCGACAAGGGTGCAGgaacgaatgaatgaacgaatgaatgctGGTGAAAGGAAGAATGAAAACGAGGTGAAAAGGTGATAATGTGATAAAATCGCAGATTCTGTCGTCTGTCCATCGCCTCGTCTGAGCATCATGTGATCTGAAGCGAACTGTAAATCCCCCTTAATCAGAAGACACAATAACGGAAAAAAGACTTTTAATCTGTAAAGAACTGCACTGGGAATAAAGCCATCGTACGGAAGCCGAGGACGGAGACGAGACACTGACGTGGCATCGCGCTCAAGAGTCATGTGACCATCAAAAGAACTTCGCCGGGGTGCCGTGACTTTTACTTAAAGCACTCCGTAACGATTTTATTACATCGCTTTGCTTCGATTGGCTGCGACATGTTCGGCGACCGACTGCAACGTGTTAACGAGTCGAAACGATAAATCAGTCGTAAATTATCCTGACATCATGTCCACGTCTTTTCGGAGAAACACTACGTTAGgaattttacagtatttacatttcagttgGACTGAAACATGATGGAAggaagtgggggaaaaaaacggaTTCAGAAAGTTCCGTGGGTCTGACCGGGTCACGAAGAGCCTTAAAGGTTACGGCTGAATGAtagacagccaatcagaatcgagtattcaAATCACATCCATGTTGCATTCTTGTTAAACCTACGCtacacttttttgtttcagaGCTTCCGGAAAATTCAGAGCTGATGTCCGTCAGTGTGAAAAGCTACGACGTGAACGCGGTGTTACTTCCTGACATTTCAGATGCTGTTCACTTTAtcgtacatttttttttggtttgtttgttttttttttttgctttgtaaatCATCGTACAAAtccgtgaaaaaaaaaatcggacGAGGAATTTTTGGAACGACGTCCCGGAGCGAGTTTGAAACGATTGGCTCTGTTACAGCAACACGTGATGACGAGTTGATTTTAACGCAGCACTTAACGTAAAAACTGTTACGACGTCTGATGCAGCTCAAAGCAACACTGTTACCGTTAACATCTGTTtgaagttttgtgtttttttgtgtgtttttttttatttcctgtgtgaGAAGCCGTCTATGCggagtgttttgtttcttttgttttaaactgCATGCGTGATGAAAGGGGAGTTTTGGTCATAGAAAGTGTGAAATATTGTTAAGCAAGTGATACACGTTACACactttgtataaaatatttggaTACGAGTGAAGAGAAGAGGTTCTGAGacgaaatgaaatgaaaaattaaacactgaTGTGGGTCAAAAAGTTTCAAAGGTAAAACACAAGAAGCCAAAAAGAAGCGTTAACCTgctacgtttgttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383429 True 2698 lncRNA 0.40 2 20129253 20185132

Neighbor

gene id symbol gene type direction distance location
kncn kncn,LOC107700491,LOC107710543 coding downstream 7545 20111370 ~ 20121708 (-)
tmem275 LOC108280259 coding downstream 18362 20105972 ~ 20110891 (-)
pbx1a pbx1a,LOC103479586,LOC104918287,LOC103143038,LOC107083372,LOC103396165,LOC101069707,LOC108438878,LOC100704482,LOC108280905,LOC106929027,LOC107732204 coding downstream 143986 19909109 ~ 19985267 (-)
ptprfb ptprfb,LOC108280478 coding downstream 460358 19512722 ~ 19668895 (-)
st3gal3b LOC108280530 coding downstream 672838 19393253 ~ 19456415 (-)
zfyve9a zfyve9,LOC108280307 coding upstream 906 20186038 ~ 20211147 (-)
thpo LOC108280322 coding upstream 26567 20211699 ~ 20218591 (-)
fam131a fam131a,LOC108280319,LOC106961227,LOC107570263 coding upstream 99724 20284856 ~ 20300145 (-)
eif4g1a LOC108280304,LOC108280982,LOC108442892 coding upstream 117468 20302600 ~ 20335715 (-)
LOC113546475 NA coding upstream 124365 20309497 ~ 20309573 (-)
LOC117599996 NA non-coding downstream 312188 19815214 ~ 19817065 (-)
LOC117599987 NA non-coding downstream 315042 19810468 ~ 19814211 (-)
G323327 NA non-coding downstream 526917 19602109 ~ 19602336 (-)
G323308 NA non-coding downstream 635523 19438223 ~ 19493730 (-)
G323303 NA non-coding downstream 737896 19391157 ~ 19391357 (-)
LOC117599978 NA non-coding upstream 185432 20370564 ~ 20376314 (-)
G323773 NA non-coding upstream 204109 20389241 ~ 20436040 (-)
G323781 NA non-coding upstream 232478 20417610 ~ 20442372 (-)
G323782 NA non-coding upstream 242974 20428106 ~ 20428391 (-)
G323775 NA non-coding upstream 259852 20444984 ~ 20446212 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other downstream 622056 19476112 ~ 19507197 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 1051336 19075000 ~ 19077917 (-)
tceanc2 tceanc2 other downstream 1122874 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 1134617 18985173 ~ 18994636 (-)
G322826 NA other downstream 1373660 18753772 ~ 18755593 (-)
G323726 NA other upstream 10162 20195294 ~ 20195672 (-)
LOC113546371 NA other upstream 199069 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 276883 20462015 ~ 20469569 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 481159 20666291 ~ 20714017 (-)
G323902 NA other upstream 642894 20828026 ~ 20830104 (-)

Expression


Co-expression Network