G323807


Basic Information

Item Value
gene id G323807
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20531485 ~ 20532305 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383559
GTCGGCtaaagctagctggctagcagcacacacacacagacaggaggaAAGCTCACCGACGGCTTTGGACAGCCGGAGCTCCCGGTTCAGCCACCGACACAGAATATCAGACATCCTGAGCGCTGTGGCGGCCCGAGAGCCGGATTctcctgtcacagactccacacAGCGGACTGACTGAGTTTAAAGATGGCGGCGGCTTGTTTACGGTTTGTTGCTATGGTTCAGTCTTCAGCTTCTCCTCAGAGGAACTCGCGAAATGGCGCCGCTGTCGTCATGGTAACCAAGCGCGCGAAGCGCAGCCGCTCAGCGTTAGCTCCTTAGCTTCTAAGCTAACGCTTCCGGCTGCTGAGgtccaatgaaaagaagaaatgaagaacGAAAGTGAAAAACTGCCATCTGTCCCCTTCTCTCTGTTTATATCAGTCTGTTTATATCAGTCTGTTTATATCAGTCTGTTTGTCCTTTTATTCATGTGTGTGAAATATGAGgagattattaataataattacaaacagtTAAACAAAGCTTCCAGAGAAATATagatttataaatattcatatttgtatatttataccATTCATCTTTCCTTCAATCTAAACATcaatctgttcatctgtgtgttgtgtgtgtgtgtgtatctgtatctgtgttgtgtgtgtgtgtgtgtgtatctgtgttgtgtgtgtgtgtatctgtgtgttgtgtgtgagtgtatctgtgttgtgtgtgtgtgtatctgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383559 True 750 lncRNA 0.45 2 20531485 20532305

Neighbor

gene id symbol gene type direction distance location
gk5 gk5,LOC108442893,LOC108442898 coding downstream 69605 20450448 ~ 20461880 (-)
ppp1r7 ppp1r7,LOC107700558,LOC107710611,LOC107677693 coding downstream 87056 20436489 ~ 20444429 (-)
ubxn7 ubxn7,LOC107677685,LOC107710610,LOC107563300 coding downstream 97943 20422172 ~ 20433542 (-)
LOC117599977 NA coding downstream 156814 20370971 ~ 20374671 (-)
LOC113546384 LOC108280310 coding downstream 180831 20338178 ~ 20350654 (-)
LOC113524963 LOC108280315,LOC108413460,LOC102229933,LOC103146349,LOC107085927,LOC103396494,LOC103353958,LOC103479750 coding upstream 200296 20732601 ~ 20757942 (-)
amy2a LOC107719254,LOC107586833,LOC107664453 coding upstream 241727 20774032 ~ 20780151 (-)
abca4b abca4 coding upstream 361438 20893743 ~ 20943796 (-)
LOC113524969 NA coding upstream 459582 20991887 ~ 20995639 (-)
eif3k eif3k coding upstream 589420 21121725 ~ 21134401 (-)
G323806 NA non-coding downstream 2607 20528353 ~ 20528878 (-)
LOC117599955 NA non-coding downstream 4229 20482074 ~ 20527256 (-)
G323799 NA non-coding downstream 16244 20514273 ~ 20515241 (-)
G323797 LOC108255633,LOC108255582 non-coding downstream 29966 20495702 ~ 20501519 (-)
G323787 NA non-coding downstream 60468 20470130 ~ 20471017 (-)
G323854 NA non-coding upstream 99950 20632255 ~ 20639180 (-)
G323856 NA non-coding upstream 109134 20641439 ~ 20653361 (-)
G323867 NA non-coding upstream 121989 20654294 ~ 20655831 (-)
G323850 NA non-coding upstream 130450 20662755 ~ 20696155 (-)
G323873 NA non-coding upstream 133035 20665340 ~ 20666190 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other downstream 61916 20462015 ~ 20469569 (-)
LOC113546371 NA other downstream 119679 20384201 ~ 20411806 (-)
G323726 NA other downstream 335813 20195294 ~ 20195672 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other downstream 1024288 19476112 ~ 19507197 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 1453568 19075000 ~ 19077917 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 133986 20666291 ~ 20714017 (-)
G323902 NA other upstream 295721 20828026 ~ 20830104 (-)
LOC113524960 LOC108280415 other upstream 413831 20946136 ~ 20976372 (-)
G323963 actn4,LOC102780626 other upstream 519902 21052207 ~ 21097709 (-)
si:ch1073-429i10.3 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377 other upstream 602813 21135118 ~ 21137825 (-)

Expression


Co-expression Network