G323854


Basic Information

Item Value
gene id G323854
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20632255 ~ 20639180 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383623
GCTGAGTTGGTGGACACCAGGCTGGTTTGAGATTGGTTGTCCGAGTTGCTGTCTTCAAGTAAGTACTCAGAATCAAAGGACTGAGCCGGTGCAATTCGTGCTTCTCTTTGCTCGGTCCGCCTCTGTGAACGATCTGACAGTCCCTCCAAACTCGAACCCTCACCCAGCGAGCACAAGGAGGTGGCTACGGATTTTGAGGGGTAACGGAAGCTGCTTCTGTGACTCCAAACCCCAGGATTTTGTGGTTTGGGAGTCATTGGCCTAGTTGGCGTATCAAGTCCTTCAAAGGAACCCAGGGATCTTGTCCAGGATGGAGATAGCTGATTAGCAAGTGCAAAAACAGTAGGGTGTATGAGTGTCTCTGAGATGTTCTCATAACTTTGGACAGACTCAAAACACTTAGATAGTGTTTTTCTCTCAGCAGGCTCCGCCTCAGGTCCAGACACTGATGCGTCAGGGTGTGATGTGCTTTTCAAATCCTCCTTGGAGCTCTGGAATCCCTGAAGATCTGGACAGTCCTCAGTTAACCCAGACACAAAGTCACTCTGGAGGCGACGTCTGGACTTGGCACCACTTGGCCCAGGAAGAGACAGAGTTCTCTTTAGCATCTCAGCCTCCTTAGTCATTTTCATCTTCTTCCAAGGCTGCTTGGATTTTGTATCCTGGCTCAGCATGTTGGAATCCTGTTGGTTGTCTTTATCACCAGTTCTGATCTCAAAGAAGCTCGACAGAGACCTCTGAGCCAGAGCAAGCTTCATGCGGAAGTTATCGCTGCTCTTGCTCTTCTTTTGGGGATCAAGTACAGGTTTAATTTGCACTCGCTCACTGTATTTGTTATGTTGTTGCATATTCTTGGAGCTGGACGTGGATCCGGATTGTCCATTCCAAGTTACACCAAGGGCTTTCCCAAAGACATCATCACTAGATTGATCCTCATAGTTTGTCAAGTGATCTGTAGTAGGATTATGATTAGGTGTCTGATTTCTCTCCTCTCCAACCTCAGGAGATAGTTTTGTCTCAGGTTCAACCTTGTTTCCATCCTTGGACTCTCTCTTGCTTTTGCGGAAGGAGGGGATTCTTGTGAACCTAGAGAACCTTGAGCTTTTCCCTGCAGACATGCTCTTGGTCTCCTTGTTCTTTAATGAGTTTTGGTTGCTGCCAGGGGAGTTGGAGCTGCTTCCCCTTGGGCCGTGACTGAGATCATCAACTTCTTCACTGTTTGTGGTGATAAAGTCTTGATCTGGAGATGCAGAATTGGGAATATCCTCATTACCATCATACCCATTTGTCAGACGAGTAGTGCTGTCTACATCTTCTGGTTTATCAAAATATCCTTTCATAGACCTGACATTGTATAGTGCATCATTTTCATCCCTTTGTAAAGGGCTGCATTCGTTCTCATTCACAGATGATGTACCATCTTTCTGTTCTCCCTCCGAACTGTCTGAGCTCTCCTGAGGGTGTTCTGACTCCATAATGGGCTCCAAATCTGATAGTGTACCAATGCTAACATCAATAAAAGGGTAACTTTTGTACTGAAGAGAATCTGGACAAAAAGGTGCTTTCCGGATTCATCATTTCCTAACCCATTGGTAACACTGATTGAGTCAGAGTGAGGCAGCAGGCTTTGCTCTCGGTGGATCTTCTGACATTTAGGTCCATCTACAGGACTAGCTTGTGAAAACTTGGAGCTTTGACAATTGGAAGGAATCAGTCCATGATGAGCATCTGTGATTGGATAGATAGTAGGATCTGCCATGATTTCCTTGTTTTCCTCCAACTGGCAATCTTTTCCATATGTCTTCCCCTGAGAAGCATCTTCTACATCAAGTGGATTTAAAACATCCCTTTTGTAATCCATCATTTCAAAGAATCTGGCAGAATTGTTTGATAAATTTGAAGGACCATCTTGCAAGGATGGATCCATATGATTCCAGAGTTCCTGTTCTAGTGGTGAACTACGTAAAGTGCAAGGTGTCTCAGATGTGTGTTGCTTTGTGTTATTGTTCGTGTCTGAACCATGATGTGCATCAAAACGCAGTGAGGTTTTTAAGACAGACTTATCCTGCATACAATAATCATCATATGAAATACTAACTTCATGTTCTTTTGCACAGACCTTTTCAACTTTAGCCTGGTTTCCTTGCAGGACCTGTTTGGTGAATTTGGTGACGCTAACAGAATCTGATGGAGTCGATTCCTTGAAGAAAACCTCAACTGGGACTGGAAGTTGTCCTACATAGCTGTCTTGAACACTTTGGTGTTCGAGAGTAACACTTTGTGATTCTTTACCAGGTGGAGACATCATCACATAAGAGTCAATATAACCCGAGTTATCTGAATAAATGACCTCCTGCTCTTTCTGGGGTATGGCAGTGAATTCCTTCACACTGCAAGTGTTCAGAAACTGCAAATTTACTAAATCATCTAAATCATTAGACCGTCTTTCAGTTTGATCAATGtccaaatccaaatccaaagtTTGTTCATCGTCCATTGGAACGTTAGGCtctgaaataaaactgttagCATACAGTGGACTTGAGGAACCTTCCTCTACTGAATAATAATCACAGTCTTTAATAGCAGAACTTTCTAATAAGTTCTCTTTGATGATGTTTGGAATTGAAAATTGTCCCTGATCTTTTTGGATTGATGTTACACCTTCAGGTTGAAGCCTTGAGCTGTCACAAGGACATATGTCCATTAATGAATCCACAAATATGTTACTATTGACCTCAGAAGGTTTTACCCCAGCTTCATAAATCTGTCCCAGAGGTTCTACCTTATTTGTGTTTATCATTATTTGTGATACTAAAGACATTTCAGAAACAGTGGGATTCTCCATTTTACTTATATTACCTGATTGTTCTTCATTTCTACTTGCACCAGTTGAATCAGATGCATTCTCTAAATAAGGCTCTGCTTCACTTCCATCTGGTGGTGCAAGAGTGTGTTTAGAAGTTGTAAAAATTTGTGAACTGATCAAATTTGTGTTGGACATGCTAGCCTGTATGATAGAAAGAAGTCCAGCTACCTCAGAAGAAGGACGATTTAGAACTTCATCCTGCTCTGAATCATCTAATACCATTGCACTGGAGTCCAGGGGTACAATGAGCTCCTCTCCATCTTTGTTCTTCTCCAGACCATCGTTCTGTGAAAGAAGTCCAGCTTCCTCAGGAGATAATGGATGATCAATTTCTGCACTCTCTACATCATCTACTAAATTGCAGTCATTTGCCAGTAGTACCACGAGTTCCTCTTTATCAGTTCTATTTCTTTCAGAATAAGACGTGTTAAGATTTCTGAAGTCAGGAGAGCTTTTAGGAGAAGGTAAGTTCCCATGATCTGTGCTCGAACCATCTAAATTAGAACTGTTGCCTAACTGAGATGGTGCTTCCCTTTTGTCTGTCAGTGTATGTGTCTCCTCAAAAGTCAGGTTTTTTGATATTGTATCAGACTCGCTAGCTTGTGAGATAGAAGAAAGTCCAGCTTCCTCAAGAGATGAACCATTTAAAACTTCATCACACTCTGAATCATCTAGAATAATTGCATTGGAGCCATCTGCCAGGGGTTCCATGAGTTCTTCTCCTTCCACTTTCATCTCCAGACCATCAATCTTTCTTTCTGAATGAGAAGAGTTCAGGTTTCTGAGGTCAGTAAAGTGTTTAGGAGAAGAAAAGTCCACATGGTCTAAATCAGAAATGTTTTCTGATTGGGGTTCTGCTTCACTTCGGTCAGTGAGTCTTAGTGTCTGTGTAAACACTGTGAAAAGTTGTGAATTGATTGAATCTGTGTTGGACATGCTAGCTTGAGAAATGGAAGGAAGTCCAGCTTCCTCAGGAGATAATCGATTAACAATTTCTGCATTCTCTACATCATCTGAAGTTACTACACTGCACTCATTAGCCAGTGGTACCATGAGCTGCTCTCCATCCATGCTCATCTCCAGACCATTGTTCTTTCCTTCTGAGTAAGAAGAGTCCAGATTTCTGAGGTCAGGAGAGCTTTTAGGAGAAGGAAAGATCCCATGATCTCCGTGACTGCTTGCAACAGTGAAATCTGAAGTGTTGTTTAACTCTGGTGCTGATGTACGTCTGTAGATCATTTCAGGTTTCTCTTTGGGAATTGTGAAAAGTTGGGAATCTATCAAATTTTGGACAGATACACTAGCCTGAGAGATGGAAGGAAGTCCAGCTTCCTGAAGAGATGAACCATTTAGAACTTCATCGCACCCTGAATCAAGATTTCTGAGGTCAGGAGTGCTTTTAGGAGAAGAAAGGTTCCCATGATCTGTGCTTAAATCAGGAGTTTGTTCTAACTGATGTGCTACTTTGCTTCTGTCAGTCAGTGTAAGTGTTTCTTCAGACGTAACCTGAGAAATGGAAGGAAGTCCAGCTTCCTCTGACATGATCTCAAGTGATGAATGATGCCCTGAATCATCTGAAATCATTACACTGGAGTCATTCGCTAATAGTGCCATGAGTTGCTCTTCACCAGTGTTAATCTCAAGAacatcattctttctttctgaataaGAAGAGTCCAGCTTTCTGAGGCATTTAGAAGATGAAATATCCACAAGATCTCTGCTTGCAACAACTAAATCTGAATCTGTCAACCCTTTTGATGCTGTGTTGGACTGCAGGATGGACGGAAGTCCAGCTTCCTCAGATGACGTCCGATTTGCAGCTCCATCACACCCTGAATCATCTAAAATCTCtgcactgcagctgtcttctaCTTGTACCATGAGTTCTTCAGAAGTTGTGAAAAGTTGCGAGTCTTTTGGTGTGTCAAACATGCAAGTAcgtgagagagaagaaaatccAGTTTCCTCAAGAACTGCACATCCTAAATCCGAGTCCAAATTCATCAAGCTGCACTCACTTCCCAATGGTACCATGAGTTCCTCTCCATCTGTGTTCATCTGTGGACCATCAACAACTGCATGCTGACCTTCTGAGTCCTGCTTTCTGAGGCCAGGGGAGTGTTTAGAGAAGCTCCTATGATCTCCAGCACAATCTGAGAAAGTGTCGCTGTTCCACGAGCGCGTCTCAAAATACTCCTCCGTCATGTCCTGAGCTTCTTCCAGGGCTGGTTCACGCCAAACATCTCCACTTTCTGCGCTCTTCTCCTGGAGAGAGTCGACATCTTCTGGATGAGTAGAATGTGCAACGAAGCCCTGGACAGCTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383623 True 5198 lncRNA 0.43 2 20632255 20639180

Neighbor

gene id symbol gene type direction distance location
gk5 gk5,LOC108442893,LOC108442898 coding downstream 170375 20450448 ~ 20461880 (-)
ppp1r7 ppp1r7,LOC107700558,LOC107710611,LOC107677693 coding downstream 187826 20436489 ~ 20444429 (-)
ubxn7 ubxn7,LOC107677685,LOC107710610,LOC107563300 coding downstream 198713 20422172 ~ 20433542 (-)
LOC117599977 NA coding downstream 257584 20370971 ~ 20374671 (-)
LOC113546384 LOC108280310 coding downstream 281601 20338178 ~ 20350654 (-)
LOC113524963 LOC108280315,LOC108413460,LOC102229933,LOC103146349,LOC107085927,LOC103396494,LOC103353958,LOC103479750 coding upstream 93421 20732601 ~ 20757942 (-)
amy2a LOC107719254,LOC107586833,LOC107664453 coding upstream 134852 20774032 ~ 20780151 (-)
abca4b abca4 coding upstream 254563 20893743 ~ 20943796 (-)
LOC113524969 NA coding upstream 352707 20991887 ~ 20995639 (-)
eif3k eif3k coding upstream 482545 21121725 ~ 21134401 (-)
G323807 NA non-coding downstream 99950 20531485 ~ 20532305 (-)
G323806 NA non-coding downstream 103377 20528353 ~ 20528878 (-)
LOC117599955 NA non-coding downstream 104999 20482074 ~ 20527256 (-)
G323799 NA non-coding downstream 117014 20514273 ~ 20515241 (-)
G323797 LOC108255633,LOC108255582 non-coding downstream 130736 20495702 ~ 20501519 (-)
G323856 NA non-coding upstream 2259 20641439 ~ 20653361 (-)
G323867 NA non-coding upstream 15114 20654294 ~ 20655831 (-)
G323850 NA non-coding upstream 23575 20662755 ~ 20696155 (-)
G323873 NA non-coding upstream 26160 20665340 ~ 20666190 (-)
G323876 NA non-coding upstream 30508 20669688 ~ 20670175 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other downstream 162686 20462015 ~ 20469569 (-)
LOC113546371 NA other downstream 220449 20384201 ~ 20411806 (-)
G323726 NA other downstream 436583 20195294 ~ 20195672 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other downstream 1125058 19476112 ~ 19507197 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 1554338 19075000 ~ 19077917 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 27111 20666291 ~ 20714017 (-)
G323902 NA other upstream 188846 20828026 ~ 20830104 (-)
LOC113524960 LOC108280415 other upstream 306956 20946136 ~ 20976372 (-)
G323963 actn4,LOC102780626 other upstream 413027 21052207 ~ 21097709 (-)
si:ch1073-429i10.3 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377 other upstream 495938 21135118 ~ 21137825 (-)

Expression


Co-expression Network