G323877


Basic Information

Item Value
gene id G323877
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20671770 ~ 20672447 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383654
AACGCACTTAATCTGTACTAACGCACTTAATCTGTACTAACGCACTTAATCTGTACTAACGCACTTAATCTGTACTAACGCACTTAATCTGTACTAACGCACTTAATCTGTACTAACGCACTTAATCTGTATTAACGCACTTAATCTGTACTAACGCACTTAATCTGTATTAACGCACTTAATCTGTACTAACGCACTTAATCTGTACTAACGCACTTAATCTGTATTAACGCACTTAATCTGTATTAACGCTCTTAATCTGTATTAACGCTCTTAATCTGTATTAACGCACTTAATCTGTATTAACGCACTTAATCTGTACTAACGCTCTTAACTAGCTATCTAACTCTGCTTATGtttaatatgtaaggaataacacacggcAGACTGCGCTGTGATGCGGAACTAGAACCGAAGagtgttattttcttataaaagcaTGTTCTGGagcgtgttattccacttacacctCTGTGATTCATCAGCG
>TU383655
AACGCACTTAATCTGTACTAACGCACTTAATCTGTACTAACGCACTTAATCTGTACTAACGCACTTAATCTGTACTAACGCACTTAATCTGTACTAACGCACTTAATCTGTACTAACGCACTTAATCTGTATTAACGCACTTAATCTGTACTAACGCACTTAATCTGTATTAACGCACTTAATCTGTACTAACGCACTTAATCTGTACTAACGCACTTAATCTGTATTAACGCTCTTAATCTGTACTAACGCACTTAATCTGTATTAACGCACTTAATCTGTATTAACGCTCTTAATCTGTATTAACGCACTTAATCTGTATTAACGCACTTAATCTGTACTAACGCTCTTAACTAGCTATCTAACTCTGCTTATGtttaatatgtaaggaataacacacggcAGACTGCGCTGTGATGCGGAACTAGAACCGAAGagtgttattttcttataaaagcaTGTTCTGGagcgtgttattccacttacacctCTGTGATTCATCAGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383654 False 487 lncRNA 0.37 2 20671770 20672447
TU383655 True 506 lncRNA 0.37 2 20671770 20672447

Neighbor

gene id symbol gene type direction distance location
gk5 gk5,LOC108442893,LOC108442898 coding downstream 209890 20450448 ~ 20461880 (-)
ppp1r7 ppp1r7,LOC107700558,LOC107710611,LOC107677693 coding downstream 227341 20436489 ~ 20444429 (-)
ubxn7 ubxn7,LOC107677685,LOC107710610,LOC107563300 coding downstream 238228 20422172 ~ 20433542 (-)
LOC117599977 NA coding downstream 297099 20370971 ~ 20374671 (-)
LOC113546384 LOC108280310 coding downstream 321116 20338178 ~ 20350654 (-)
LOC113524963 LOC108280315,LOC108413460,LOC102229933,LOC103146349,LOC107085927,LOC103396494,LOC103353958,LOC103479750 coding upstream 60154 20732601 ~ 20757942 (-)
amy2a LOC107719254,LOC107586833,LOC107664453 coding upstream 101585 20774032 ~ 20780151 (-)
abca4b abca4 coding upstream 221296 20893743 ~ 20943796 (-)
LOC113524969 NA coding upstream 319440 20991887 ~ 20995639 (-)
eif3k eif3k coding upstream 449278 21121725 ~ 21134401 (-)
G323876 NA non-coding downstream 1595 20669688 ~ 20670175 (-)
G323873 NA non-coding downstream 5580 20665340 ~ 20666190 (-)
G323867 NA non-coding downstream 15939 20654294 ~ 20655831 (-)
G323856 NA non-coding downstream 18409 20641439 ~ 20653361 (-)
G323854 NA non-coding downstream 32590 20632255 ~ 20639180 (-)
G323898 col11a1b,LOC108280296,LOC108411368,LOC106569819,LOC107710593,LOC107680048,LOC107745694 non-coding upstream 148042 20820489 ~ 20821095 (-)
G323923 NA non-coding upstream 192018 20864465 ~ 20864950 (-)
G323907 NA non-coding upstream 260387 20932834 ~ 20946068 (-)
LOC117599936 NA non-coding upstream 308991 20981438 ~ 20990308 (-)
LOC117599984 NA non-coding upstream 466923 21139370 ~ 21146706 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other downstream 202201 20462015 ~ 20469569 (-)
LOC113546371 NA other downstream 259964 20384201 ~ 20411806 (-)
G323726 NA other downstream 476098 20195294 ~ 20195672 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other downstream 1164573 19476112 ~ 19507197 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 1593853 19075000 ~ 19077917 (-)
G323902 NA other upstream 155579 20828026 ~ 20830104 (-)
LOC113524960 LOC108280415 other upstream 273689 20946136 ~ 20976372 (-)
G323963 actn4,LOC102780626 other upstream 379760 21052207 ~ 21097709 (-)
si:ch1073-429i10.3 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377 other upstream 462671 21135118 ~ 21137825 (-)

Expression


Co-expression Network