G323902


Basic Information

Item Value
gene id G323902
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20828026 ~ 20830104 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383689
GATGTGTGCTGGAGTGATTTATACAGAGTGTGAGATCAGTTCACGGTGCTGCACCTCGTCACTGTTCCGTGTTTAATGGCTGATTTGTTTCTGTGACAGTTTAAATCATAATAATTctaaatcctgtgtgtgtgacagtttaAGTTACTCTCAGACTCCAAAAACCTGTTTCATGTAAATTGGAGTCTTTCAGccatttttagatttaatttcagCATCATATCCAAAACCACTGAGCGGAGTAATGCTGTAATCATCACAGAGGAAGTGTGTAGATTTTATCTGGAGCGCAGCACGAGTCCGTGCACATCTTCACTTCCGTGTTAATtaccacacacactgaagatcAGCGTTTCAGAGACAAGTCAAAAACAAGAGAGAATCAGAGCTCCGTTTAacttcacaaacacaaaccctGATTGCTTCTGACAGAAAACTTGGAGTGTTTAATTCCCTGCACACttcatttcagattttattaaacacagcCTTTCTGAGATAAACCGAGACACACGACTGAGAGCTGCTCCGATTTCAGCTGAGCGTTGATCCAGACTCCATTATTCCTCACTGATACACCTCAAATTCAGCCGAGTGTAAACACACTTCTGCACAAAATAGGACTAAATCAAGCGGCTTTTCAtgcaacataataataataataataataataataataataataataatgatgatgatgatgtgattataaactgattttagcatttttaaatacatatcaTTCATGCGATCATATAATCAGCACACTGTGATATTTTGAAGTCAGTGCCAGAGTTCAAGAAAATCATTAAATATGGCAGGGCTACATTCTCCATGTGTCACATAACGAATCCAAGATTAAATTACGTAAGAAAGATTTACTAATCATGATCATTCCGAtcgggaaaacacacacagtttccagaaaataaatcaagatTTGAAACCACAATCAGTGAGTCAACGAGAAAGGCATGGAAGCCTGGAGAGGAGAGTGAAAGTTTACTGATGACAAAATCATGAACCATTTAATCCAGCTAACTCAGTCGTCCCGCTAACTCAGTCGTCCCGCTAACTCAGTCGTCCCGCTAACTCAGTCGTCCAGCTAACTCAGTCGTCCCGCTAACTCAGTAATCCATGTAGAAAGAATGGGCTCCAGCTCAATAATCAGATTATTCAGCACATGTACACTGTTAATCTGATATCTGTTGTTTTTCTAGAGTCTCATCTCTGTCTTTAGATCATAACTCAAAACAGCTAAGAGAAGAAGAACAGTGTGTTCATTCTGCATCATAAAACCTACAAAAAAAACTCATGAGTACTTCTTGTTAAAAGCTTCACGTCACTGAACAGCatgcaaatgaaattaaaatagcacgtttattaaattattgtcaAACTGTATTATCATTGGACAGCTAGTGTGTTATGTCTTGCAGGTAAAAGTGCTGAGTGTtgaatattatttttcagtaataaGGACGGAGAAGAGAAAATggtgtgtcagtgtttgataAGTGATGAAATGCAGCCGTTCCTTCAGCGGAGACTTTTCTCCAAACAGCAGCAGCGAGTCTGTGAGCTTATCACTCTACTGGGAACTGTAAAACCACACAATGTGTTTCCCAGCAGTGGgcgagagacacacacacacacacacacacactcagagagagagagagagagagggagggagatgtgtgtggtgtgtgaagcgtcagtgtgtgtgatagatGCTCCGTTCTCCAGCTTTCTCTCCACAGGAAGTCagtttcagaggaaaaaaaaaagaagaagaaggaaaagtaGAAGAAAGGTGAAGAATGCAGTGCACcctggagagagaaaaaaagaagcagacaGTGTACAAAGATCAGAGACGaggttttaaaaatgcattatttatctaaaaaaaaacagacacaccaAATCCTACATTTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383689 True 1943 TUCP 0.39 2 20828026 20830104

Neighbor

gene id symbol gene type direction distance location
amy2a LOC107719254,LOC107586833,LOC107664453 coding downstream 47875 20774032 ~ 20780151 (-)
LOC113524963 LOC108280315,LOC108413460,LOC102229933,LOC103146349,LOC107085927,LOC103396494,LOC103353958,LOC103479750 coding downstream 70084 20732601 ~ 20757942 (-)
gk5 gk5,LOC108442893,LOC108442898 coding downstream 366146 20450448 ~ 20461880 (-)
ppp1r7 ppp1r7,LOC107700558,LOC107710611,LOC107677693 coding downstream 383597 20436489 ~ 20444429 (-)
ubxn7 ubxn7,LOC107677685,LOC107710610,LOC107563300 coding downstream 394484 20422172 ~ 20433542 (-)
abca4b abca4 coding upstream 63639 20893743 ~ 20943796 (-)
LOC113524969 NA coding upstream 161783 20991887 ~ 20995639 (-)
eif3k eif3k coding upstream 291621 21121725 ~ 21134401 (-)
LOC113525403 NA coding upstream 308571 21138675 ~ 21147038 (-)
ngef ngef,LOC104956402 coding upstream 317777 21147881 ~ 21164789 (-)
G323898 col11a1b,LOC108280296,LOC108411368,LOC106569819,LOC107710593,LOC107680048,LOC107745694 non-coding downstream 6931 20820489 ~ 20821095 (-)
G323850 NA non-coding downstream 131871 20662755 ~ 20696155 (-)
G323877 NA non-coding downstream 155579 20671770 ~ 20672447 (-)
G323876 NA non-coding downstream 157851 20669688 ~ 20670175 (-)
G323873 NA non-coding downstream 161836 20665340 ~ 20666190 (-)
G323923 NA non-coding upstream 34361 20864465 ~ 20864950 (-)
G323907 NA non-coding upstream 102730 20932834 ~ 20946068 (-)
LOC117599936 NA non-coding upstream 151334 20981438 ~ 20990308 (-)
LOC117599984 NA non-coding upstream 309266 21139370 ~ 21146706 (-)
G323989 NA non-coding upstream 367986 21198090 ~ 21198331 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other downstream 114009 20666291 ~ 20714017 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other downstream 358457 20462015 ~ 20469569 (-)
LOC113546371 NA other downstream 416220 20384201 ~ 20411806 (-)
G323726 NA other downstream 632354 20195294 ~ 20195672 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other downstream 1320829 19476112 ~ 19507197 (-)
LOC113524960 LOC108280415 other upstream 116032 20946136 ~ 20976372 (-)
G323963 actn4,LOC102780626 other upstream 222103 21052207 ~ 21097709 (-)
si:ch1073-429i10.3 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377 other upstream 305014 21135118 ~ 21137825 (-)

Expression


Co-expression Network