G324001


Basic Information

Item Value
gene id G324001
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21222176 ~ 21222600 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383831
caaaaaatatattgtaaatatgtgaatttatccctaatgagcaagccagaggtgacggtggcaaggaaaaactccctgagatgatatgaggaagaaaccttgagaggaaccaggctcaaaagggaccccatcctcatctgggtgcaacggatagtgcgattataaataaatcccttctattattgtgtactatatggacaaatagtgcaattgtgcaaccaataaattcatcacagtttttgtaagaagtccggttggttaaaatctatccactgtccactgatggagtcctgagtacgaagctgctcgtggcaactgcagccccaaagccactacagcaatcccagtcccaagccattacagtacagctccccatatgtgatccccaagccatctccacagcctccaggtggcgccatccccag

Function

NR:

description
stromal cell-derived factor 2-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383831 True 425 lncRNA 0.46 1 21222176 21222600

Neighbor

gene id symbol gene type direction distance location
LOC117599990 LOC108280298 coding downstream 2450 21217823 ~ 21219726 (-)
LOC113525405 LOC108280416 coding downstream 4481 21199196 ~ 21217695 (-)
LOC117599949 LOC108280418 coding downstream 31006 21183325 ~ 21191170 (-)
gpr55a LOC108280411 coding downstream 49845 21167393 ~ 21172331 (-)
ngef ngef,LOC104956402 coding downstream 57387 21147881 ~ 21164789 (-)
insl3 LOC108280363 coding upstream 1216 21223816 ~ 21224580 (-)
si:rp71-39b20.4 LOC108280329,LOC103032005,LOC108415754 coding upstream 3194 21225794 ~ 21228030 (-)
angptl4 LOC108280821 coding upstream 7590 21230190 ~ 21234613 (-)
G323989 NA non-coding downstream 23845 21198090 ~ 21198331 (-)
LOC117599984 NA non-coding downstream 75470 21139370 ~ 21146706 (-)
LOC117599936 NA non-coding downstream 231868 20981438 ~ 20990308 (-)
G323907 NA non-coding downstream 276108 20932834 ~ 20946068 (-)
G323923 NA non-coding downstream 357226 20864465 ~ 20864950 (-)
si:ch1073-429i10.3 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377 other downstream 84351 21135118 ~ 21137825 (-)
G323963 actn4,LOC102780626 other downstream 124467 21052207 ~ 21097709 (-)
LOC113524960 LOC108280415 other downstream 245804 20946136 ~ 20976372 (-)
G323902 NA other downstream 392072 20828026 ~ 20830104 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other downstream 508159 20666291 ~ 20714017 (-)

Expression


Co-expression Network