amer3 (amer3)


Basic Information

Item Value
gene id amer3
gene name amer3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20592866 ~ 20602531 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911357.2
CCACTGTGtactacatttacacacattttagagCGAAAGTATGCGTTTTTCATTCATATCCGTGATTTTCTGAGTTATGAATGTGTCTTGGCAATATGGAGTTGTCCAATAACCAAAAACAGACTCGAGGGGACAAAAGTCCTAAAACAGAGACAAGTAAAGGTCAATGCGCTGAAGGAGGCGGCTCTCCTGGCACCTCAGTTTACATTACTGTCAGTGAAAACAATCCAAATGTGTCCTCAGAGAATCTACTGTCTCCAAATACCCTGGACATACCTTCCCCAGACATCAGTTCCAGTCTCTCTGATGGGTGGACTCAAGACTTTAGCTATGATTATGTTAAAAAGAGCAGAACTCACGACTGCGTGATGGAAATTAGACCAGATAGCCCATTAAGTCCTGAGAGCAGAGATCAAGCATGTTCACCATCCATGTATCATCACACCAGGCTTGTTAACAGTGCTAGCTTTCCTGAATTTGGTGCAACTCATCGGTTGTTACATGAAAATCAGTATACATCTGCCAACAACCGGGAAATCATTGATTACCGCAATCTGACACCTCAAGTGCCGTTTGTGCCTTCCATCGCCAAGTCCATTCCAAAGAAAAGGATCTTTCTTAGGAAGCCCAAAAAGGCCATCAAAGACCTTTTTGTCCACAAGAAGCACAATAGTGAGAAAACAACATCACCACGTACACCATGTCGTGAATATGGaccaacaacaaaacaaactaaGAAATCCTCAAGATGCCGTGAATCCAGGACTTCTCGCAAAAAGAATGACACACTTTCCGACTCCTCGAGTGAAGGGTGCGCTAACGTATGCGAGGATGCTGTGTCACTGAAAAGCTTCGGCTCACAAGCCGGTTGTGGAGAGATATTTGCAGATGAGGAATATCTTGTCTCTCTTGAAGGGATGCCAAAACTTAAAATAAGCAGGGATACCAGCGAAACTCTGAAACGAAGTCCTGCTGCCTTTCAGGGAGGCATGGAGCAACTAGCATCACCTTCTCATCCTGAAGTCTTGGACTTGTTTGGAATGTGGGACACCATCAATAGGACTGTTCTTTTTAGTCAAAGTTCGAGTGAAGAAATGAATACAACCTCTACACCAATTTCTATATCATCCTCCTCAAACGAGACAGCATATCCCATTGAGAATGATACgagcaaaaacatgacagaacaaGAAAATAATCCGAGTCATACAGTGACACCAAAAAGTGAGAACCAAGAAAGCACCAGTGATGAGGGTTACTGTGATTGTATTTCTACTGAAGATCACACCGGGCAATCTCTAACACCAATATTTTCCAGAAAATTCCCTAGGGACACATACAGTGGAGATGCTCTCTATGAGTTATTTTATGATCCAAGTGAGGCTGAAATGACCCCAATTTTTGATGATGAGCTGGATCTACCAAGCAGCATTATTGGCCAGCCAAGTCCAGACCTCCCATTATCCATGTACAGCTTCCATATTGGATCAGAAGAGAACCTGGCACCTCCTCTATCAGTAGACCTCATTGGTAGCCATGACTTTCTGCAGAGTAACTGGGTAGGGAAGGACTGCTTACTGAAGCTTTGTGATACAGAAATTTCCCTGGCTATGGGTATCGTCAACTGGATGAACCATAGGAAAATCAAGGGTAACCATGCAGAGTTGGGAACTCCAGAGATTAGCACTGGCGCTAATGGAGATGTATGTCAAGAAGAAAAAGCTCAAATAACGGATCTTGAAAATGTCCCAAGTAAAGCAGTTTTGAGGACCACTCATAGTAGAGACAACATACCTGACGTTAAATTGAGCAAACCTTGTCAAGTAGATGTTGGTCATCTCTCAGTGGATACATTGAAACACCATGCTGGAGTGGTTACAACACCAGAGAGCCAACCAAGGACCCCAACAAGTCATGTATGCTTCAGAATATTCAATATCAACTCACCATCAACACCCAACAAGGATTTGGAGTCTCCTGTAGGATGTTCTCCTGGCTCTGGAACGAGTTCCTTGTTTGTGCTGGCCATAAACAAAGAATCTCTTTGTGAATCTTGCAAGGGGTCCCTGAAACATGGTGCCAAGGAGCTACACTTGTGCCATTCGTGCACCTCCTTCATTGAACGAATAAAGATGTCAGAGTTGTGGCCTTGTGCTAATCTTTACCAAGCTAAGCTTGCAGGAAGTCCTCAAGTCTTGCTTCGTTCTCCAAGCAGCAGTTGCGGTATAGCAAGTGACATCAGTATTCTTTCACTAGTTGAGCAGTGTGCTAATCAGATGTCTTCGTTGAAGCTTAACCAACATCCGTCTGAACATGAAATGAGAGCTATCGCCAATCAAGGAAGTGATAACTATCCAAGGAAAGATCGTGCCAGGAGGTATGTCAAGTCCAAGCCCAAGAAGAAAGGGAATGTAACAGGAAAAGTGGGTGATAGTACAAATGTCAAAGACCGTTTCAGCCATGTAGCATGTAGTCCATCCCTACTGGAGGCGAAGAGGCTTGGCCTTGTCGCAACCAATGGATCAGACAGTTTAGTCCTGGAAGCATACAAGAGTCCATGCTACCTACAAACTAATCCGTTCAAGGACACTGATGTATCTCAAGCTTCAAGGCCAACATCCCTTCCTCTCACAAGTGCTACCTCCTCTCATTTCTCTAAAAAAGAGCACCACGATGCCATCAAGGTCAAAGAAAAAACGCGTGAAAGATCGCGACGAGACAGAAGACCAGCGGTGAACAGGGATGGCTTATCAGACAACGTAACCTCAGAGGAGAAGAAGATGGAACGAAGGTGCAGGATGAAGAAATAAAGCAGATTCTCATCTCACAGTCAGAGCGACTTTATCGGGCAGCTAATATCTtcaccagctgtcaaaatgtacatttataatgaacaaatatgtaaattaatCATGTATCTCTCTTCATTTGTTCTGTTGGAGAAAATCTgaattatttcctttttttgacaTTGTGAActaatatttttcttctcttcctctttttattttgaagtgaATAGAGATTTTTGATTGACTGATACATAAGTGAACACGGttgatatttttgtaaacattcCCAGTGTTAGAACTCTttaaggttctgtgtagaacagtTTTAGGAAGAGAAGAGTGTGTAGCGTCGTACAGCTGCGTGTGGCgcgtcactgtgtgtgtgtgtgtgtgtgtgttagcatcaTAGCTTTGTGTTTAAAACCCATTAAAGTAAAactttaatgtgtgttaatgtaaatgCACAAGTACagatataatgaataataaacctCACATAGAATGAGctcataaacattttataaaaaaaccCGAAACATTTAGACAAGTAAATATTTCCCCCCAAATtctcattttattattcttcGTAAAGAACGCACAGAAAAAATTACTTTTCTTtcgtttattatttatttattaactatcCTTAGAAGAAATTACAccatggatttatttatttttaattgttttattttattttattttttgttacatttttattagtttgGTTTTTACAACCTTTACA

Function

symbol description
amer3 Predicted to enable beta-catenin binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in regulation of canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including adipose tissue; blood; central nervous system; digestive system; and pleuroperitoneal region.

NR:

description
PREDICTED: uncharacterized protein LOC107710619

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911357.2 True 3537 mRNA 0.41 4 20592866 20602531

Neighbor

gene id symbol gene type direction distance location
atr atr,LOC107677746,LOC107700496 coding upstream 3408 20572562 ~ 20589458 (+)
spef2 spef2 coding upstream 20528 20532000 ~ 20572338 (+)
lifra LOC108255632 coding upstream 66944 20505684 ~ 20525922 (+)
zgc:110269 LOC108280318 coding upstream 115902 20469525 ~ 20476964 (+)
cc2d1b LOC108280309,LOC107553237 coding upstream 412232 20157318 ~ 20180634 (+)
col11a1b col11a1b,LOC107594685,LOC107680048,LOC107700498,LOC107564536,LOC107710593,LOC104931259 coding downstream 205096 20807627 ~ 20883606 (+)
tecrl2b LOC108280320 coding downstream 283729 20886260 ~ 20892997 (+)
trnap-ugg_22 NA coding downstream 312873 20915404 ~ 20915475 (+)
LOC113524959 LOC108280417 coding downstream 378218 20980749 ~ 20991604 (+)
LOC117595742 LOC108280410 coding downstream 523342 21125873 ~ 21127829 (+)
LOC117599946 NA non-coding upstream 114521 20476972 ~ 20478345 (+)
G323536 NA non-coding upstream 141974 20449973 ~ 20450892 (+)
G323503 NA non-coding upstream 143539 20434479 ~ 20449327 (+)
G323524 NA non-coding upstream 150496 20417572 ~ 20442370 (+)
G323504 NA non-coding upstream 175382 20380197 ~ 20417484 (+)
G323574 NA non-coding downstream 49702 20652233 ~ 20653361 (+)
G323576 NA non-coding downstream 67154 20669685 ~ 20670160 (+)
G323577 NA non-coding downstream 69197 20671728 ~ 20672454 (+)
G323578 NA non-coding downstream 70403 20672934 ~ 20705194 (+)
G323603 NA non-coding downstream 330701 20933232 ~ 20946079 (+)
G323534 NA other upstream 152305 20438702 ~ 20440561 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other upstream 311799 20129253 ~ 20281067 (+)
LOC113546339 NA other upstream 1276660 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1372637 19204658 ~ 19220229 (+)
ssbp3a ssbp3,ssbp3a other upstream 1607784 18944698 ~ 18985082 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other downstream 35053 20637584 ~ 20663819 (+)
G323615 NA other downstream 418658 21021189 ~ 21157280 (+)

Expression


Co-expression Network