tecrl2b (LOC108280320)


Basic Information

Item Value
gene id tecrl2b
gene name LOC108280320
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20886260 ~ 20892997 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911369.2
CTGCGTGCAGCATGGACACCGTGCAGTTAAAGGATTTATTCACCGTCGCTCACTTTATTAAAGCCAGATGTGATCACGGCCTGAAAGCCGGAGAACCTAAATATGccaaaaattatgtttttttcgAGGTGGAGATCCTGGACCCAAAAACCCGGACGCAGCTCTGCTACCTGGACAAGGTGGATCCGAGTGCCACCATCGGAGAAATCAAGATCCTGCTGCACAAATTATATCCGAAGTGGTATCCAGCAAGACAAGCTCTGAAACTCCATCCTGAGGGAAAAGCTCTTCAAGATGAAGATGTTTTGGAGGAGCTGCCTGTGGGGACGACGGCCACCATGTTCCTGCAGGACCTCGGGCCTCAGCTCGGCTGGACCATGGTGTTTCTGTCAGAAAGCATCGGGCCGCTTTTTATTTATCTGCTGTTTTACTATCGGCTGCCGTTTATCTACAGTCACGAGTACGACTACACACGAAGCTCACACACCGTTGTCAGactggcgtgtgtgtgtcactctctGCACTATATAAAGCGATTAGCGGAGACGATATTCATCCATCGATTTTCACACGGAACTCTGCCGctgcacaccatcacactgaattgtttatattattggGGATTTGCAGCGTGGTTAGCGTACTACATCAACCATCCTCTCTACACCACACCCAtGTACGGAAAAATTCAGATCTACACGTCACTCGTTACGTTTCTGATCTGTGAGTGTGGAAACTTCTCCATTCACCTCACGCTGAATCGACTCAGGTGTGACGGATCGAGGCCGATGCAGATTCCATACCCGAGTAAAAACCCGTTCACGTGGCTCTTCTTCTTCGTCTCCTGTCCAAACTACACTTATGAGTTGGGTTCATGGATCAGCTTCACGGTGATGACGCAGTGTGTTCCAGTCGCCGTGTTCACACTGATCGGGTTTGTACAGATGACCATCTGGGCTCGAGCAAAACACAAAACCTACACACAGGAGTTCGGGGATTATCCTGAACTCAGGAGCGCCATCATTCCACTCTTCCTCtagtgatttgggacacagccgtCACAGAACCCTTTTATAACctaatttaatttacaaaatgtaaaaaaaaaacgatgcaGGACGGAGAGAAATATTTACACGTAAAATATTATAGTGCATTAAGtgcaaaattctgaaaaaatcTCCGTCCCAAACCCAGAGTTCGTCCCTGCTTAGTGTTCTTACTGAAACATTAACACTAAAGAGACAAGAACTGAGATCTAGTgttacagtaaacaaaaaacacacaccagcttAATAATGTCATCTAATAAACACCTGTAATCTGCAGGATCAGCTCGAACACTGCAGCGCTCTGGGCTTTAGTTGCTAGTGACAGGATCTGGTTACATCATCTGCGTgtcttatttcattttattttattttattttattttctcgaAGTGTTTTTCTCTAATTACAGCGTTTGGGACACAACCTGACTTCACTGTGATCTGAACTTTAAACCACCAAAAGATGAATGTTtgctaaaatgtatttatataaactgtaatattgcaataaaattaaatattttctacaAAGTTAAATGTTTTCGGGATCCTGTAACCAGCCGCTGATCATTTCAACCTCGA

Function

NR:

description
PREDICTED: very-long-chain enoyl-CoA reductase-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K10258 TER, TSC13, CER10; very-long-chain enoyl-CoA reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911369.2 True 1632 mRNA 0.44 12 20886260 20892997

Neighbor

gene id symbol gene type direction distance location
col11a1b col11a1b,LOC107594685,LOC107680048,LOC107700498,LOC107564536,LOC107710593,LOC104931259 coding upstream 2654 20807627 ~ 20883606 (+)
amer3 amer3 coding upstream 283729 20592866 ~ 20602531 (+)
atr atr,LOC107677746,LOC107700496 coding upstream 296802 20572562 ~ 20589458 (+)
spef2 spef2 coding upstream 313922 20532000 ~ 20572338 (+)
lifra LOC108255632 coding upstream 360338 20505684 ~ 20525922 (+)
trnap-ugg_22 NA coding downstream 22407 20915404 ~ 20915475 (+)
LOC113524959 LOC108280417 coding downstream 87752 20980749 ~ 20991604 (+)
LOC117595742 LOC108280410 coding downstream 232876 21125873 ~ 21127829 (+)
G323578 NA non-coding upstream 181066 20672934 ~ 20705194 (+)
G323577 NA non-coding upstream 213806 20671728 ~ 20672454 (+)
G323576 NA non-coding upstream 216100 20669685 ~ 20670160 (+)
G323574 NA non-coding upstream 232899 20652233 ~ 20653361 (+)
G323553 NA non-coding upstream 282068 20528505 ~ 20604192 (+)
G323603 NA non-coding downstream 40235 20933232 ~ 20946079 (+)
G323624 NA non-coding downstream 74516 20967513 ~ 21024078 (+)
LOC117599988 NA non-coding downstream 131175 21024172 ~ 21024556 (+)
G323625 NA non-coding downstream 133424 21026421 ~ 21037720 (+)
G323643 NA non-coding downstream 133828 21026825 ~ 21089934 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other upstream 222441 20637584 ~ 20663819 (+)
G323534 NA other upstream 445699 20438702 ~ 20440561 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other upstream 605193 20129253 ~ 20281067 (+)
LOC113546339 NA other upstream 1570054 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1666031 19204658 ~ 19220229 (+)
G323615 NA other downstream 128192 21021189 ~ 21157280 (+)

Expression


Co-expression Network