gpr55a (LOC108280411)


Basic Information

Item Value
gene id gpr55a
gene name LOC108280411
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21167393 ~ 21172331 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911893.2
attacatttacatttacagcagagACTTTATCCACAGTGAAGTACAGTGTTTTTACATCAGAAACATCATCATGTTAGTTCAATAGACTGACACAGAGAAGCAGTCAGGAAGTAAGAACTCAGACGTTGTTCGTCTTTGATGGCAGTGGTGTTTTCTGGAGGCTAAAGTTTTCATCATGGCAGGCTGCAGAGACTGGGTGGAATGTGTTCAATTTGGCTTCTACATTCCCGTCCTCGCCGCTGGTTTTCCTTTAAACATGGCCGCCCTGTGGCAGCTGTTCTTCCGCGTTCGTCGCTGGAATGAATCCACTGTTTACCTCCTGAACCTTGTCATTAATGACTGCCTGCTCCTTCTCGCACTGCCGTTTAAAATCATGGCTTATCACCGGCCATGGAATCTCGGACGCTTTTCCTGCTCACTGTTTGAGAGTTTTGTCTACGTCAACATGTACGGCAGCATTCTGCTGAGTGTGTGCATCTCCGTGGATCGTTACGTCGCTCTGAAATTTCCCTTTCGGCGCCTGCGATCCATACGGAAGGCTGTGTTCGTCTGCGCAGTTATGTGGACATTAGTGTTTGGGTTTAGCTACCCAGTTTACGATCTCCATGGGgacaacagtaacaacaacaagTCCTTCTGTTTCCAGAACTTTTCCAGCGAAACATGGAAGAAACGGTGGATCgtagtgtgtgtggagtgtgtgttttggggcaGCACTCTCGTCATGGTAGTCTGCTCGGTGCACGTCGTTAAAATCCTGCATGGTTTACGCAAACGAAACCCCAATGATGCTAAACTGCGAAACAACAAGAGTGTAAAGATAGTGCTCAGCAACCTGGTGGTGTTCCTCTTGTGTTTCATTCCGTATCACATTGCTGTGCTTCTTTATTTCTACTTTAAACAGAGCAGCAGTCAAGACATCATTGATGAACTGCGTAAATTTGTTCatgtcagtctgtgtgtgagcAGCGTGAACTGCCTCGCTGATGCAGTCTGTTATTATTTCATACTGAAAGAAAACCTGCAGATCGCACAGCAAGATGCCAGAGCCAGCACACtcagacagcacacacacttatctaTAGCACACAGTGGCGCACACTAAGAGGTGCGGAGgcacacaggaaaaaaataaaacatgaatctGCGCAGAATTAGAATTGTTTACGTATGGACATGTGGATTTATTTTACTGCCACACATTACTCCAGGGGGTTTCAGTGTGGTGGTTGGTGTGGCTACATACACTAACTGGTATTAACAAATGGGAAACATTTAAATCTATTAATAACCACAGTGACAACAACAGGCGGGTTACCTAATTCAGCTGTAACATCGAATGTGTTTTCGATTCAGAATCTGTCCAGTGGGGAGCAAgatttagacacagctgacacTGAAATTGCACATTGATGTGTAAGAAGCAGGAAAAAGTAAGACAGAAGATTAGTAAGACAAGAGCTGCTGAGTCAAATAAATTTTATGGAACAAATTATGTTTCACTTTATTGCCCTTTCTTGTAGATCAGCGACCTGAGCAGAGAGTCCAagccaaaatgttttttaaaaattgtcatttcATCTTTTAGTGAGCTTGGGGTGATTTTAACATTGCAAAGATTTTATAACTTTAGGAGAAACATgttgtctcctcacagctccaggatcgaTCCCGAGCTCAGGTAatagtctgtgtggagtttcacgtgTTCTCCCTGTtttctgtgtgggtttcttccaggtgtttactgaaagtgagttaATGAATGTTCTTATGAGGGCCAAAACATTTGCACTCCTGAGTTGGTGTGTGAACAGGAAGCTGTTTCCAgctagaaataaacacacagacagacagacacacacacacacacatttctgtcacACAGCATTGCAGCTGCAGCTCTTCTGcttttacagaataaaaaactTTGTGCTGGTaaaccacttcctgtttgaatgaatgtaaaaattCTTTCTGTATCTGGCTCCGAGTTCTGGTTTGGAATCAGAATCTCATTAAACATAAAGGCTCAAAATTTGTGCGGTA
>XM_026911894.2
GTAGAGCTTCTGTATGGAGCAGTTGTGGATCTCCTCCATGTCACCCGATATGACCAACCCTGCAGACTGACACAGAGAAGCAGTCAGGAAGTAAGAACTCAGACGTTGTTCGTCTTTGATGGCAGTGGTGTTTTCTGGAGGCTAAAGTTTTCATCATGGCAGGCTGCAGAGACTGGGTGGAATGTGTTCAATTTGGCTTCTACATTCCCGTCCTCGCCGCTGGTTTTCCTTTAAACATGGCCGCCCTGTGGCAGCTGTTCTTCCGCGTTCGTCGCTGGAATGAATCCACTGTTTACCTCCTGAACCTTGTCATTAATGACTGCCTGCTCCTTCTCGCACTGCCGTTTAAAATCATGGCTTATCACCGGCCATGGAATCTCGGACGCTTTTCCTGCTCACTGTTTGAGAGTTTTGTCTACGTCAACATGTACGGCAGCATTCTGCTGAGTGTGTGCATCTCCGTGGATCGTTACGTCGCTCTGAAATTTCCCTTTCGGCGCCTGCGATCCATACGGAAGGCTGTGTTCGTCTGCGCAGTTATGTGGACATTAGTGTTTGGGTTTAGCTACCCAGTTTACGATCTCCATGGGgacaacagtaacaacaacaagTCCTTCTGTTTCCAGAACTTTTCCAGCGAAACATGGAAGAAACGGTGGATCgtagtgtgtgtggagtgtgtgttttggggcaGCACTCTCGTCATGGTAGTCTGCTCGGTGCACGTCGTTAAAATCCTGCATGGTTTACGCAAACGAAACCCCAATGATGCTAAACTGCGAAACAACAAGAGTGTAAAGATAGTGCTCAGCAACCTGGTGGTGTTCCTCTTGTGTTTCATTCCGTATCACATTGCTGTGCTTCTTTATTTCTACTTTAAACAGAGCAGCAGTCAAGACATCATTGATGAACTGCGTAAATTTGTTCatgtcagtctgtgtgtgagcAGCGTGAACTGCCTCGCTGATGCAGTCTGTTATTATTTCATACTGAAAGAAAACCTGCAGATCGCACAGCAAGATGCCAGAGCCAGCACACtcagacagcacacacacttatctaTAGCACACAGTGGCGCACACTAAGAGGTGCGGAGgcacacaggaaaaaaataaaacatgaatctGCGCAGAATTAGAATTGTTTACGTATGGACATGTGGATTTATTTTACTGCCACACATTACTCCAGGGGGTTTCAGTGTGGTGGTTGGTGTGGCTACATACACTAACTGGTATTAACAAATGGGAAACATTTAAATCTATTAATAACCACAGTGACAACAACAGGCGGGTTACCTAATTCAGCTGTAACATCGAATGTGTTTTCGATTCAGAATCTGTCCAGTGGGGAGCAAgatttagacacagctgacacTGAAATTGCACATTGATGTGTAAGAAGCAGGAAAAAGTAAGACAGAAGATTAGTAAGACAAGAGCTGCTGAGTCAAATAAATTTTATGGAACAAATTATGTTTCACTTTATTGCCCTTTCTTGTAGATCAGCGACCTGAGCAGAGAGTCCAagccaaaatgttttttaaaaattgtcatttcATCTTTTAGTGAGCTTGGGGTGATTTTAACATTGCAAAGATTTTATAACTTTAGGAGAAACATgttgtctcctcacagctccaggatcgaTCCCGAGCTCAGGTAatagtctgtgtggagtttcacgtgTTCTCCCTGTtttctgtgtgggtttcttccaggtgtttactgaaagtgagttaATGAATGTTCTTATGAGGGCCAAAACATTTGCACTCCTGAGTTGGTGTGTGAACAGGAAGCTGTTTCCAgctagaaataaacacacagacagacagacacacacacacacacatttctgtcacACAGCATTGCAGCTGCAGCTCTTCTGcttttacagaataaaaaactTTGTGCTGGTaaaccacttcctgtttgaatgaatgtaaaaattCTTTCTGTATCTGGCTCCGAGTTCTGGTTTGGAATCAGAATCTCATTAAACATAAAGGCTCAAAATTTGTGCGGTA

Function

NR:

description
lysophosphatidic acid receptor 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911893.2 True 2050 mRNA 0.43 3 21167393 21171398
XM_026911894.2 False 2029 mRNA 0.44 3 21167393 21172331

Neighbor

gene id symbol gene type direction distance location
ngef ngef,LOC104956402 coding downstream 2604 21147881 ~ 21164789 (-)
LOC113525403 NA coding downstream 20355 21138675 ~ 21147038 (-)
eif3k eif3k coding downstream 32992 21121725 ~ 21134401 (-)
LOC113524969 NA coding downstream 171754 20991887 ~ 20995639 (-)
abca4b abca4 coding downstream 223597 20893743 ~ 20943796 (-)
LOC117599949 LOC108280418 coding upstream 10994 21183325 ~ 21191170 (-)
LOC113525405 LOC108280416 coding upstream 26865 21199196 ~ 21217695 (-)
LOC117599990 LOC108280298 coding upstream 45492 21217823 ~ 21219726 (-)
insl3 LOC108280363 coding upstream 51485 21223816 ~ 21224580 (-)
si:rp71-39b20.4 LOC108280329,LOC103032005,LOC108415754 coding upstream 53463 21225794 ~ 21228030 (-)
LOC117599984 NA non-coding downstream 20687 21139370 ~ 21146706 (-)
LOC117599936 NA non-coding downstream 177085 20981438 ~ 20990308 (-)
G323907 NA non-coding downstream 221325 20932834 ~ 20946068 (-)
G323923 NA non-coding downstream 302443 20864465 ~ 20864950 (-)
G323898 col11a1b,LOC108280296,LOC108411368,LOC106569819,LOC107710593,LOC107680048,LOC107745694 non-coding downstream 346298 20820489 ~ 20821095 (-)
G323989 NA non-coding upstream 25759 21198090 ~ 21198331 (-)
G324001 NA non-coding upstream 49845 21222176 ~ 21222600 (-)
si:ch1073-429i10.3 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377 other downstream 29568 21135118 ~ 21137825 (-)
G323963 actn4,LOC102780626 other downstream 69684 21052207 ~ 21097709 (-)
LOC113524960 LOC108280415 other downstream 191021 20946136 ~ 20976372 (-)
G323902 NA other downstream 337289 20828026 ~ 20830104 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other downstream 453376 20666291 ~ 20714017 (-)

Expression


Co-expression Network