si:rp71-39b20.4 (LOC108280329,LOC103032005,LOC108415754)


Basic Information

Item Value
gene id si:rp71-39b20.4
gene name LOC108280329,LOC103032005,LOC108415754
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21225794 ~ 21228030 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911896.2
GCGGCTACTTGAGGGATTGATGATTTGGAGTGTGTTTTTGTCACAATTTAAACTATTAATTTGACTGAACCTGGAAAAATATTCTTAGACTGTTTTTTGATTTCTTTCTCAAATAATTGCTTGTCAGTGGGTAGACACctcattcttctttttctgtagATCTGCAATGATGAACCAATCGAGGCGTCATTTCAAACAGCTGATAAAGAGGCGATCAAGTCTTTTTGCTAGCGTTAAACTCAATGCCAGCTTCTCACAAAGCATCGAGGAAGAGGACAGtgcttttcctttttcacaGGACAGTTCTGTTAAACCATGGACATCAATGGACAGACTCGACAGTCCGGTGAATAAAgtagaagatttaaaaaatacaagaaaagaaaataaatgtaatgatacAAAGCCACTGCACAGACATTCGGGATTGATAAGCCTTAATATAGGTGGAAAATTGTTTCATCTTTCCAGACATCTGGCCATTAAATATCCTAAATCACGAATCGGGGCTTTAGCTGTGTGTTCGGATCCTGTAGAGCGGCTGACGCTCTGCGATGATTACTGTGTGATCAATAATGAATTTTTCTTTGACCGAGACCCAACGTTCTTCCACTACATCTTCCACCTGTACTACAGTAACATGCTCTGGGTGATCGAGAGCGTGTGTCCCATTCACTTTGAGGAAGAAATTGAGTTTtggggtttaaatctgaatgacACACCTCGCTGCTGTCGAATCTTGTATGAGGAAAAAGTGGATGAAATTCGAGACCAGCTGAAGGTGAATAAAGAACTGATGGCTGAAATCGAGCCTGTTCACAATGAGGAGggatttaaaacaatgtttctGGGTGATTTTCGCAAGACTCTTTGGGATTTAATGGAAAATCCGTACTCATCTGTGGGAGCAAAGTTTTTTGCTGTGTTGTCCACCACCTTTGTGCTCATCTCAATTGTGGCAATGACTCTAAACACTGTGAGTGAACTGACAGAATACAAAATTTATGGAAGAACATACATGGAGTTTGTCGAGATCAGTTCAATTCTCTTCTTCACCTTTGAGTATTTCCTTCGTCTCCTGACCACCTGTGATGTGAAGAATTTCCTGAAAAGTGCCCTGAACTTTGTTGACTTGGTAGCGGTGATGCCGTATTTTATCCAGCTGGTGTTTGAGGCATTTTCTGATCAGGAAGATCTCAGTGTTCAAGACGACCTCAAAACAATGGCACGAGTGAGCAAAGTCAGCAAAGTGCTAAAAGTTGTCAAATTGATGAGAATTTTTCGCATTCTGAAATTAGCAAGACACTCGACTGGAATGCGAGCATTTGGATTCACTCTGCGTCAGTGTTTCGAGCAGGTGTGctgcttatttttattcattattatgggaatctttgttttttctgctcTAATGTACTCGGTGGAACAGGACATGACGGGGACACCATTCAGCAGCATTCCAGATACGTGGTGGTGGGCAGCAGTGAGCATCTCCACAGTGGGCTACGGTGATGAGATCCCAGTTTCATTTTCTGGTTGTGTTGTGGCATTTGGCTGCATTTCATTCGGGATTATTTTAAATGGAATGCCGATTTCTAttctctttaataaattttcaGATTATTATGCCAAACTCAAAGCACAGGAATATACTAACACTAAAGTCCAGCGCAGTCTGCACCTCAGAAAACGCTTACAACGAAAGTTTGAGAATTGTTTTAATTCTCAAGACAATGAAACAGACAATGAATTTCAGCATCAGAGATGAAACTTTACACATTGGTTTATTACAGTCTGATCAAATATGTG

Function

NR:

description
potassium voltage-gated channel subfamily V member 2-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911896.2 True 1809 mRNA 0.40 2 21225794 21228030

Neighbor

gene id symbol gene type direction distance location
insl3 LOC108280363 coding downstream 1214 21223816 ~ 21224580 (-)
LOC117599990 LOC108280298 coding downstream 6068 21217823 ~ 21219726 (-)
LOC113525405 LOC108280416 coding downstream 8099 21199196 ~ 21217695 (-)
LOC117599949 LOC108280418 coding downstream 34624 21183325 ~ 21191170 (-)
gpr55a LOC108280411 coding downstream 53463 21167393 ~ 21172331 (-)
angptl4 LOC108280821 coding upstream 2160 21230190 ~ 21234613 (-)
G324001 NA non-coding downstream 3194 21222176 ~ 21222600 (-)
G323989 NA non-coding downstream 27463 21198090 ~ 21198331 (-)
LOC117599984 NA non-coding downstream 79088 21139370 ~ 21146706 (-)
LOC117599936 NA non-coding downstream 235486 20981438 ~ 20990308 (-)
G323907 NA non-coding downstream 279726 20932834 ~ 20946068 (-)
si:ch1073-429i10.3 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377 other downstream 87969 21135118 ~ 21137825 (-)
G323963 actn4,LOC102780626 other downstream 128085 21052207 ~ 21097709 (-)
LOC113524960 LOC108280415 other downstream 249422 20946136 ~ 20976372 (-)
G323902 NA other downstream 395690 20828026 ~ 20830104 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other downstream 511777 20666291 ~ 20714017 (-)

Expression


Co-expression Network