LOC113525405 (LOC108280416)


Basic Information

Item Value
gene id LOC113525405
gene name LOC108280416
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21199196 ~ 21217695 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911902.2
tttgggtttcgtgcgagtgtgtgagttCCTGCTGTCTCAGCCTGGAGCTCTCATGGTCATTAATTCAGCCAATCAGGAAGGAGACACTCCACTTCAGCTTGCCCAGAGGACCAATCAGCAGACACTCGTGCACCTGCTCACACATCCTCCAAACCCACTCACCACTCCTCTTGCTGGAGTGTCTCACATTCAAATCGACTCATCCCACCTTTTGCGCTTTATTCATGCCTCTGGAGTGATGTCCCtgtcggtgtgtgtgtcagaatgtGTGTCCTCTACTCAGTTACACTCAGCAATCTTACTGCTCAGAGAATGTGTCATGGATTCTGCCCTCATACACAAGattACATCATTATGTGGACGTATACAGTGCAGATCAGATCAGGAGTCTTTATCATCATCTTCagAGGATCTTCAGTCAGGAGAATCTcctcacaccatcatcacacacacaGATTTAATCAGCAGCTGCAGTGACCCTGAAGATGAAGAACTTTTACTGTCCATCAGCTCAGGTGGATCAGACACTGAGGCAAACACTGCAGCTGTGTTTAACCATGAACCCACAGATATGCAAAAgcaacactacactgagactgagagcAGAACATGTacactgacctgcacagAGTATCTTGAAGAAACAGCTCTCATCAGTGAGAGtaagtTGACTGTTAATGAAGGAGCAGTTGTGGAGGAGACAGGCGAATGGCCAGTGCGGACATCAACTCAAACTAATGTCACACACAAGGTCCCGCTGAAGGCATCTACACTCTCCATGTTGCTTTGTTCATCAAGCCACAGCTCTCCATCCCTGTTCAGCAGCAGCCACAAGAACTCCACctcacacaggaggaGGAGTAACAGTGAGGGGTGTGGTCACGAGATGACAATGAGGAAATCAtggtctctgattggtcagtgtgtCAGTAGTTCCTCAACTCCATGTGAAATCACAGttCCTGCACCGTTGGATTATTCCGCCGAGTCGTGGAGTGCTGTTGTCGGGTTtgaattctcacacacacttgaccGAAAAACTGTGAAAAGACAGGAAGTGATCTATGAGCTCATGCAGACAGAGTTTCATCACGTTCAGACTCTCACGGTGATGAGTGACGTTTTGAGGCGGGGCTTAGTGGAGGAGGTGCAGCTGGAACaggatgtgattggtcagattttcCCATGTTTGGATGACCTCATAACTCTGCACAGGAACTTCTTGACCAAGATGGAGAACAGACAACACACTTCAACACACCTGAGCAACAACAAGAACTTCATCATCCACAGGATCGGAGACATACTGCTACAGCAgttcTCATGTACATCTGCAGGTCACATGACGGCTCTGTATGGAGATTTCTGCAGTAAACAATCTGAAGCACTGAAAATTTATAAACAACTTCAACAGAGCAACAGGAAACTACAGCTGTTCCTCAGACAGCAGAGCAGTAATTCAGTCATTAAACGCAGAGAAATCCCAGAATTCCTGCTGCTGGTTACACAGAGAATCACAAAATACCCCGTCCTGCTGGAGAGACTACTGCAGCACACCGATGGGGACAGAATCGAGCATGATGATGTCATGGCGGCGCTGGAGGGGGTGCGGTGTGTGTTATCAGGTGTTGAGCTGCATGTGGAGAAAATCCAGCGTGCACGGGAACTTGATGATATCATCAACCGTTTGGATAACAAGAGCTTCACTCGCCTGAAGAGTGGAGAGATCTACagcaaacacactctcacacacacaccacacacactcacacactctgctACACTCACTTGCAGGACTACATCAGGCAGactgagagATGTTTTCGCACTTCTTCTCTCTGATGTTCTGGTTTTTCTTCAGGAGAAAGAGCAGAAGTTCACATTCGCTGCtttggAGCAGAAACCTGCTGTTGTTCCTCTGCGTGCTTTGATCCTGAGAGAAATTGCCAATCAGGATCGAGGACTGTTTCTGATCAGTAGTGACGCAGCAGAGCCAGAAATGTATGAGATCCACACACAAAATcgtgaagagagagacaggtggatcACACTGCTGCAACGCAccacagacagTTTGCCTGATAATGAACTGAAGAATAATGAAGAGATGAAATGCAAgaacataaacacactgcaagaggctcTGTTTTCTCTAGATGTGCAGGTGTATGCAGTTCTGGAGGAGAAACTCAGGGTATGTGTTGGGAATTTGACTCACCAGCATCTgctcatacaaacacacacacacacaccacgtgGAGCGACACTACTGACTGCTGCACAGGCAgaggTAGTAAatctgctggtgtgtgtgatgtcactgCTCTTTGGTTATCATGATTTCATTCAgcatgCTGAGGAACTGAGCAAGAAACGTCTAAAACGGAAGGAACCTCTTATACTAAAGGTGGTGGACTGTGTGCAGAGTTTAACTCAGATCTTGTACAGTCTCCAGGCTGCAGTTATGATGCAAGACAGTGTGTACGAGGTTCAGAAACTCCTGATCCTGGAGGAAGAAACTCTGCAGCCTGACACTGATGGGAAGGTTGATGACGGGAGTATGCGCAATTCAAATGTGGAGCAGAGAGACAGCGATCACTCTGAGGAGATGGACAggatgaaaagagagaaggaagaacTGGAGGTGGAGCAACAGCAGTGGGTGGAGCGAGCTCAGGCTCTGAGAGAGGAGGAGGCAGGAGTGGAACGAGAAAGAAGGCGGATCCAGCAAGAGGAGAGACGAttaagaaaggagagagagaggatggagaggaAACTCCGCCTCTCACAGCAAAACTCCACCAATCGCCAGCGCAGCCTGTCAGTCATCCCACTGGACAAATAAGTGTGATGAAAAATGTAGtgagggtgtagtgtgtgtatgtagtgaaagtgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911902.2 True 2897 mRNA 0.48 26 21199196 21217695

Neighbor

gene id symbol gene type direction distance location
LOC117599949 LOC108280418 coding downstream 8026 21183325 ~ 21191170 (-)
gpr55a LOC108280411 coding downstream 26865 21167393 ~ 21172331 (-)
ngef ngef,LOC104956402 coding downstream 34407 21147881 ~ 21164789 (-)
LOC113525403 NA coding downstream 52158 21138675 ~ 21147038 (-)
eif3k eif3k coding downstream 64795 21121725 ~ 21134401 (-)
LOC117599990 LOC108280298 coding upstream 128 21217823 ~ 21219726 (-)
insl3 LOC108280363 coding upstream 6121 21223816 ~ 21224580 (-)
si:rp71-39b20.4 LOC108280329,LOC103032005,LOC108415754 coding upstream 8099 21225794 ~ 21228030 (-)
angptl4 LOC108280821 coding upstream 12495 21230190 ~ 21234613 (-)
G323989 NA non-coding downstream 865 21198090 ~ 21198331 (-)
LOC117599984 NA non-coding downstream 52490 21139370 ~ 21146706 (-)
LOC117599936 NA non-coding downstream 208888 20981438 ~ 20990308 (-)
G323907 NA non-coding downstream 253128 20932834 ~ 20946068 (-)
G323923 NA non-coding downstream 334246 20864465 ~ 20864950 (-)
G324001 NA non-coding upstream 4481 21222176 ~ 21222600 (-)
si:ch1073-429i10.3 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377 other downstream 61371 21135118 ~ 21137825 (-)
G323963 actn4,LOC102780626 other downstream 101487 21052207 ~ 21097709 (-)
LOC113524960 LOC108280415 other downstream 222824 20946136 ~ 20976372 (-)
G323902 NA other downstream 369092 20828026 ~ 20830104 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other downstream 485179 20666291 ~ 20714017 (-)

Expression


Co-expression Network