angptl4 (LOC108280821)


Basic Information

Item Value
gene id angptl4
gene name LOC108280821
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21230190 ~ 21234613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911905.2
GAACTGCGCGAGACAGACACGGTATTGAGTGCGTGAGGGTCTCAGTGTactaacgcacacacacactcacacactcacacagagcgAAATGAAGATGAAGCTGTCGGAGCTGTTGTGCATCACGGTGCTCGTGAGTTCCGGTTCTGGTTCTCCGTACGAAAGAAAAGCTCCTGCAGGAAAAGAGAAGCGCGTGCAGTATGCCGCTTGGGATGACGTCAACGTGCTCGCGCACGGCCTGCTGCAGCTCGGACAGAGTCTGAAAGAGCACGTGGACAAAACGAAGGGACAGATGAGGGACATTTCTGTCAAGCTGCGAGTGTTTAACGGCAGCGTGAGTGAGCTCGCGGCACTGACACGGCGCCTGCACGAGGAAAGCGAGGCTCTTAAAGCGCGAGCTCAGAGTCTGGAGGAGCGTGAGAACCGGATCCTCAACATGTCCTCCGACCTGCAGGAGAAAACCGGAGAGCTGCTGAGGGACAGACAGCGCGCGCACGACAGGATCGGTAACCTGGAGGAAAAAGTGGACACCATggtgcagagagacaggcacGCGCTCACGAGCGGCAATCACAGCGACGCGCGCGCCATTCAGTCACTGCTGGAGGCACAGAATCAGCGAATCGATGAACTTGTGGAAAGAATTAAACAGCAGCAGGAAAAACTGGACAAGCAGAACATTCGTATTAGAGCGCTGCAGAATGAAATGCAGATGAGAAAGGAGAGCCTGAACCCAAGTGCTGATGAAGTTCGGACCGAACAACAGGATACGACAACCGCAACAGCGTCAAATTGTCAAGACGTGTTCCTGCGTGGAGAGACAGCAAGTGGAGTTTACACGCTGCAGCCTCACGACTCGCCACCACTCCGCGTCTACTGTGAAATGACTACTGaagGTGGCTGGACCGTTATCCAGAGACGCCATGATGGATCTGTAGATTTCGATCAGCTGTGGAACGAGTATCAAAACGGATTCGGAAACCTTGATGGTGAGTTTTGGCTCGGACTCGAGAAAATGTACCGTATGACTAAAGATGAAGATTTTATCCTGAAGATCCAAATGTCTGACTGGAGAGACGAGCATCAAAGCGTGCAGTACCGTTTCCGTCTGAATGGGGAGGACAGGAATTATTCTCTCCAAATTCTGGAAAGTCCTGTTGGGAATCTGGAAAGTTCTTTAAGCACTGAGTCATCCAGTCTTCCCTTTTCAACCCGCGACAGAGACAACGACCAGAAACACGATTTCAACTGCGCCAAACATCTGTCCGGTGGCTGGTGGTTCAGTAACTGTGGCCGTTCCAACCTCAACGGCAGGTATTTCATCACACCTCCTAAACAGAGGCATCAGAGGAAACAGGGAATGTTCTGGAAGACCTGGCACGGTCGATATTATTCTCTGAAAGCTACAGTGATGATGATTTCACCTGTTCGCTAAACACTGGTGACGCTGCAGACTGTAACGGTGACGTCACTTCTGTAAGAAGATCTTTCCTAAAGAATTTCTTGGTGCTCAGAATGTCAGACAGGTCTCTTTTGTTAAATTTGTATGGATAAAGTGATTTATGAATCTGAGAGAAGCTACAAGGTAGAAAGGCAAAAAATCAGATTCCAGTGTTGAGCCGAAACCCAGTTCTGCGTGTCAGAACGATTCTGTAGGAATTTTCAAATGCGAAATATCGCCGAAAGCTACAGAAAGATTAGAGTTCATTTTCAGAGGCTTCTTATTGAGATcgtttacaaaaaaatgaattcatgGACCAAACAGCAGATAATCCACTTTAAACCACTTAAAGAAATGGCATTATTTAAAGGCATTTTTCCAgagaaaaactcaaaaaaaactAATTGTAACTATAGATGTGTAAAATTCGAGTTCTTCACAGGAGTGTGTTATTCAGCGAGTTTGAACCTGTGCACATTCCTGTGAACCGACCTTCAGTCATATTGACTGGTGTTAATATTTTACTGCTGTTTTCACTTTAAACattgaaatgtgtttgtgtttgtgtcagtgttGTTATCTATTAATGTTGTGATATGATGAGATATTTGTCTTATTTTCATTATAGTTGTGGTTTTAACATTctttgtacattttcattttctttcataattTATGTTTGCAAGATAAGCCATAGTGTTAGCATTTTTTTACAAGAAGAGAAATCTTGGTCTCAAACAGACcaataaaacttattttttaaaaccctt

Function

NR:

description
angiopoietin-related protein 4-like

GO:

id name namespace
GO:0009617 response to bacterium biological_process

KEGG:

id description
K08767 ANGPTL4, PGAR; angiopoietin-like 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911905.2 True 2208 mRNA 0.45 7 21230190 21234613

Neighbor

gene id symbol gene type direction distance location
si:rp71-39b20.4 LOC108280329,LOC103032005,LOC108415754 coding downstream 2160 21225794 ~ 21228030 (-)
insl3 LOC108280363 coding downstream 5610 21223816 ~ 21224580 (-)
LOC117599990 LOC108280298 coding downstream 10464 21217823 ~ 21219726 (-)
LOC113525405 LOC108280416 coding downstream 12495 21199196 ~ 21217695 (-)
LOC117599949 LOC108280418 coding downstream 39020 21183325 ~ 21191170 (-)
G324001 NA non-coding downstream 7590 21222176 ~ 21222600 (-)
G323989 NA non-coding downstream 31859 21198090 ~ 21198331 (-)
LOC117599984 NA non-coding downstream 83484 21139370 ~ 21146706 (-)
LOC117599936 NA non-coding downstream 239882 20981438 ~ 20990308 (-)
G323907 NA non-coding downstream 284122 20932834 ~ 20946068 (-)
si:ch1073-429i10.3 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377 other downstream 92365 21135118 ~ 21137825 (-)
G323963 actn4,LOC102780626 other downstream 132481 21052207 ~ 21097709 (-)
LOC113524960 LOC108280415 other downstream 253818 20946136 ~ 20976372 (-)
G323902 NA other downstream 400086 20828026 ~ 20830104 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other downstream 516173 20666291 ~ 20714017 (-)

Expression


Co-expression Network