LOC113533117 (LOC108280188,LOC108433071)


Basic Information

Item Value
gene id LOC113533117
gene name LOC108280188,LOC108433071
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12968314 ~ 12982849 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924981.2
TTGACATGcatgaagtgggcgtggctaacgCATCGCCCCGCCCCTATAGATAGTGGTCCCATTCCGCCTTCATATTTACTTCCCTGGATCAAACGGTTGTATTGCTAGGTGTTTTATTGCTCGTTGCAAGCCCGTCGCATTTTAGAAACAGTGTTGTGctctgtatttttgtgaatACATGTCCATACGTGTCGTAAAGCTAACCAGGCTTTGCAGAATCGTCGCATGTCTGTCGAGCCGACAGCAGGGATGCTTGCGCTTGTGCGGGGATTTATCATGAAGGACTGCCGGTGCTGGGATGCGGCCAGCCGCAAAAACTACGAGGAGCTGTTTGAAAAACTAGACACCAATAAAGATGGGAAAGTTGACGTGGCAGAGCTTCGGACAGGTCTCATAGCGATGGGGATAGCCCTGCGTACTGGAGAAGCCCagAAAATACTGGCCACCGGTGACAAGAACAGGGACGGTGTGCTTGACTTCACTGAGTTTGCCAGATACTTGAAAGAGCATGAGAAGAAACTGTGGCTCACGTTCAAGAGCTTGGACAAGAATAATGATGGTCGACTGGATGCCTGTGAGATCAAACAGTCTCTATCTGAACTGGGAATGGACATATCCACAGAAGCAGCACTGAAAATCCTACAGAGTATTGACAATGACGGCACAATGACTGTGGACTGGAACGAGTGGAGGGAGCACTTCATGTTCAAGCCTACTACTGACCTGGAAGAAATTATTAGATACTGGAAACATTCCTCGCAGCTGGACATTGGTGATAATCTCGTCATTCCTGATGAGTTCACCAACGAGGAGAAGATCTCTGGTGTTTGGTGGAGACAGCTAGTTGCCGGGGCAACAGCAGGGGCAGTTTCTCGAACAGGCACTGCACCTTTGGATAGAATAAAGGTTTTTATGCAGGTTCATGCATCCAGGTCAAATCAAATCAGTCTGGTGGGGGGGTTCAAAAGGATGCTTAACGAAGGAGGAGTGACATCTCTGTGGAGGGGAAATGGCCTCAACGTGTTAAAAATCGCCCCCGAGACCGCTATCAAATTCATGGCCTATGAACAGTATAAGAAGTATTTGTCATCCGAGGGTGATAAAATAGAGACAGCACAGAGATTCATGGCTGGCTCTTTAGCTGGTGCCACAGCACAAACTTCCATTTACCCTATGGAGgTAGTGAAGACTAGACTGACCCTGAGGAATACCGGAGAGTATTCCGGGATGATCGACTGTGCCAGGTCAATTCTGAAAAGAGAGGGCATTAAGGCTTTCTATAAAGGTTATGTTCCCAACATGCTGGGCATTATCCCTTACGCTGGTATCGACCTTGCTGTTTATGAGAGCCTAAAGAATGCCTGGCTTGCACACTATGCCAGAGACACAGCCAACCCTGGGGTTCTGGTCCTCCTGGGCTGTGGTACTGTCTCCAGCACATGTGGGCAGCTGGCCAGCTACCCTCTGGCCCTGGTACGCACTCGTATGCAGGCACAAGCATCGCTCGATAACTCGGAGCAGCCATCTATGCGGTCACTGATTAAGAGCATTGTGGCGAAAGAAGGCTTTTTCGGTCTCTATCGGGGGATCCTACCCAACTTCATGAAGGTCATTCCAGCTGTCAGCATCAGCTATGTAGTGTACGAGTACACAAAATCATCGCTGGGTATCTCAAAGTGAATGTCACTGGGCCATGTTCCCAAATCGCAGCATAGAAGTGCCGTTCCTGGATCCGTTTATCTTTTTAAACAcaggaaaaaatgtattaatcatGTGGATCAGCCACAATCTGATCCCAGATCAGTATTCATGTGTTAAAAAGCTTCATGAGTCCAGACTGTTTTTGGCGTTTTACAGCACTTTTCTTCATGAATGTCCCATCTGCACTACACACCACTGACTTTTAAAACCCATAGAAGTGCATCAGTAGTGTCTTACAAACAAGGATGAAGCAGTGGGATGGACTCATACCCTGTAGATTTAACTACATGGTTTAGTTATATAgttatttgtcatttgtttatttaaatttgtagcAATAGGAAAGGCCGGTCACTGCACTGAATAATATGGCAAAGAAGATTTGCCTTATGGCTTGCATGCTATGACGTCTttattgtgtgtctgtgcatgtgaaCATCTGATGTCTGTGAATGttggttttatttctattacattatttttatatttttatattttattagaaatttATACATTGTAGACCCCAAAGTACCATTGCATAACCCACCAGATAACACCAATGCATCACAGAGAAAGGTACTAAAATGGGTCGTTTATccaaattataaataatgaaaaatctgTTCCAAAATCTGTGCCCTTATTGACTTACCCTCCCAAATTCCAAGTGGGAGGAATTTCCGTCGCCATCATAACGGCTCCTGCTTGATGTTATCAGTTATTGTGAAAACTGTTGGCGGCTTTAAGGGCTGAGGGATTGAGTGAACCAGAATTTGCCCAGAAGGCATTGCAATCTGATGTAATTTCCTTTTCAAAACAGCATAAATTGTGGATGAAgctgtttataaatgtaaacagaaacaataaaattagaatattaaaaaaaagtagatgaATAATTCTGTATGTAGTTCAAAACAAATGGACTATTGAAATCACCAAAGAAATTGCTTTCATTCTTttatgaaattgtttttttttctttcttttcttaattatatttttctagTACTAAGCAGTTAGTACACTAGATTTTTAGCAAGGCAAAATCCAAGGATATTGCTTTGACATACCATatgaaaaaaacactatttgttATAAGGGGAAGTCAGTGGATGGTTGGAACACATTGCTACTGTGAGTGGTTAGTAAAATCACATACTATGACCAAATACGTAAATATGTTTATTGTGTGCTAATCATTCTTTGCTAATCAAGTTTGTTTGCATATGCAAGGTTTGTTAAGTGAAACTAACCCTGTTTGCATAAGGAGAATGACAAAAAATGCATCTGATATGAACAATGCTGCACAATTGCATCCAGTGCTATCTGCcatatgttagctagctaacataaccAAAATATTTGCTGtactgtttgtcattttaatatACAGTTCATTAACAAGTTTTGAGACCAAGACAGAAGGCAGGTTTTTCTATTATACTACATTTGTTCGTATTTCTCAGTGATGAATGTCTAGATAATGGGCCTTGTTTACTGATCTTTTCGTAAATcaataaatggaaatgttttcgTAGGCCAAACCAAACCAACGTttcacaaactcaggagctttcgtaggatatgaacatttttccaaactaacAGGATTTAATAactaccacatttcttgtgtaaatgctcctgctaacgatttatgaataaattcttTCATACCCAgtctgataaatgaggccccttGTCTATACAGTTTCTGGATGTAAACTCCAAAATGATCTAGAATTGTATTCAAGGAAGTGACTTGAGACAGTTTTAGTTGTTAGCCATTATAGCACAAGTCTAATCTCAAGActaatcttttaatttttttcatttttagcaaCATGCTAACTAAATGGCATGCTAACACTTATGTGAATAATGACATAGGCTGAAGGGAAAATCTAGTAATTCAGTCTTTATCATTGTAGTATCACTGCGAATACACAGTTTTAGACTGTTAAAagtatgtttatgtttgtgttggCTTTGTATTTGAATGGATGCTAATGCTTGAATAAAGACTATGTTCATTtatcatgtaaatataaaagagGCTGCTGTTTTAGGGTAAATGCCTTCCTGCatggacatacagtatactacaAAATGTCTGGAAGCCAATATTTCTTATTCTGTGTAGTGCATTGGGATTGCACCagtgttgtcatggtaacagaGCAACCTTGACTGGCCTGTAGACCTCCTAAAAGCTTGTGATATCGACAGAACAAGTTTGTTTTCGTCAGCACTTCTTCTTGTCGTCAAGCCCAAGAACAAAATGTTACTTGTTTTGCGTCCATACCACCCtccacccattttttttttttttttaataaatcacttTATATTCCTTTTTTCTGTGATGTCATTTTTGCTAACACAGCATAAGAGTCCTTGAAAGGGCGAGTACATGTTATAGGCTCCAT

Function

GO: NA

KEGG:

id description
K14684 SLC25A23S; solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924981.2 True 4133 mRNA 0.41 10 12968314 12982849

Neighbor

gene id symbol gene type direction distance location
LOC113533470 NA coding upstream 171490 12782537 ~ 12796824 (+)
LOC113533522 NA coding upstream 539783 12416510 ~ 12428531 (+)
pax3a pax3a,LOC108280216,LOC108439877 coding upstream 1345469 11596699 ~ 11622845 (+)
trnag-ccc_6 NA coding upstream 1395417 11572827 ~ 11572897 (+)
trnai-aau_17 NA coding upstream 1419126 11549115 ~ 11549188 (+)
abhd17aa abhd17aa,LOC108280794,LOC108433103,LOC105904035,LOC107757810,LOC107698472,LOC107599293,LOC107600230,LOC106584389 coding downstream 21945 13004794 ~ 13014554 (+)
rorcb rorcb,LOC108280913,LOC108433101,LOC107757806,LOC107698501 coding downstream 203082 13185931 ~ 13216057 (+)
sh3gl1a sh3g1,LOC108433099 coding downstream 234641 13217490 ~ 13241937 (+)
stap2a stap2a,LOC108280350,LOC108433098,LOC107713653,LOC107698505,LOC107757807 coding downstream 270761 13253610 ~ 13265447 (+)
sema4e LOC108280345 coding downstream 284905 13267754 ~ 13285252 (+)
G319198 NA non-coding upstream 162582 12805522 ~ 12805732 (+)
LOC117599962 NA non-coding upstream 204587 12761836 ~ 12763727 (+)
G319087 NA non-coding upstream 340424 12627675 ~ 12627890 (+)
LOC117599992 NA non-coding upstream 342560 12622299 ~ 12625754 (+)
LOC117599989 NA non-coding upstream 395907 12559513 ~ 12572407 (+)
G319276 NA non-coding downstream 39478 13022327 ~ 13023135 (+)
G319286 NA non-coding downstream 54173 13037022 ~ 13037736 (+)
G319314 NA non-coding downstream 104414 13087263 ~ 13087475 (+)
G319318 NA non-coding downstream 119498 13102347 ~ 13102608 (+)
G319330 NA non-coding downstream 157425 13140274 ~ 13140482 (+)
G319170 NA other upstream 165295 12765055 ~ 12803019 (+)
G318439 NA other upstream 1498815 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 1503545 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 2234226 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 2399407 10563821 ~ 10568907 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 38293 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 854584 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 1097400 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 1403389 14386238 ~ 14466753 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 1654932 14637781 ~ 14666508 (+)

Expression


Co-expression Network