armc6 (armc6,LOC107696408,LOC107671809)


Basic Information

Item Value
gene id armc6
gene name armc6,LOC107696408,LOC107671809
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15659976 ~ 15666070 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925001.2
CCGAGTGCGTAAATATTGTCATTGGATTTAACCTAGCTGTCTTTACTCTTATAACGTAGCGCTCTGTTCTTCACAGCTGGGTGGGATTTTATCGTTGAGTTGCAGACTGGGTGGTGCGTGATTCATTACTCTGCAAACATGGCGAAACGTAGAATAACGCAGGAGACGTTTGACTCGGCGGTGAGGGAGAACATTGAGGAGTTCGACATGGAGGAGAGTGAAGCTCTGAAGGAAGCAATCGAGCAGTTTGAGTCTCAGGGTGTGGACCTGAGTAATATTGTGAAGGCAGTACCGAAAGCGTCTTCTGAAGAGACCACAGATGATCAAACTCATGAAGTCCTCCAGGCTCTGCAGTCTCTCAAAAGTGCGTTAGAGTCCTCGTCCACATCCGTGTTGGAGAGTTTAAAGCTCTTCACAGAGCAGTGCTCCCTCGGCTTTGCTCAGCGATACCTGGCGGCCCAGAAAGACGCCTATCCCACACTCCTCTCCTGCTGCCAGTCTGCTGGTGAAGACAATGAAGTGCTCTCTGCTACTCTTGCTGCTCTTTCTGCGCTCACTGATGGCCAGCCTGATCTTCTGGACGCTGAGGGTCAGGGCTTTTTGATAGACACCTTACGCAGCCACCAGGAGGATCCGGCGCTGATCTGCCTGGGTGTCCGGACGGTGCGTCACTGCTGTCTGAAGCACGAGCAGAACAGGCAGGACTTGGTGAAGGCCGGAGTGCTTAACTTACTCACCAGTGCCATAACACAGCACGTTGCACGGCCTGAGGTGGTCAAAGAGGCCTGCATCGCTCTCAGAGTCATTACCTTTGATGATGACGTGCGGGTTCCTTTCGGCCACGCACACGAGCACGCCAAAATGATCGTATTAGAGCACAATGGACTGAAGGTCATTGTAGATGCTGCTAAAGCCCATCCCGAGAACATTCCAGTCCTCAGCGAGCTGTGTGCCACTCTGTCCCGCCTCGCTGTGAGGAACGAATTCTGCCAAGACATTGTGGATTTGGGAGGACTGAAGTTTATGATGACGCTGCTAGCGGACAGCTTGGACTGTCAGgACCTTGTAAAGCAGGTGTTGAGTGCATTGCGGGCGATTGCAGGCAATGACGATGTCAAAGACGCCATTGTGAATGCAGGAGGGACGGAGCTTATTGTCATGGCGGTAAACCGGCACATGAGTAATGCACAGGTGTGTGAACAGGGTTGTGCTGCTCTCTGCGTGCTCGCTCTGCGCAAACCCAATAACTGCAAAGTCATCATGGAGAGTGGAGGAGCTCTGGCTGCGCTGCAGGCCATGAAGACGCATCCAGAGGAAGTTAACGTGCAGAAACAATCGTGCATGCTGCTCAGAAACCTGGTGTCACGAACACGCGATTTCAGCCAGCCCATTTTGGAGATGGGGGCCGAGGCCCTGATTGGTCAGGCCCTGGCCTCTCACAGGGACTGCAGTGATGTGGCGAGAGCCGCTCTCAGAGACCTGGGCTGTCAGGTGGAACTGAGAGAACTGTGGACTGGCAAGAAAGGAAGCCTGACTAactaaaacaccaaaaaaaactgTGGAAGAGGGACTGAACAGTtcagctaataataaatatgtacaccATTAAAGAGTGGTGTACTCAAGCTCCAGGGTTCCATTCTTCATACGTGGATAAATGGAAATGATTGGATTTGATTGGATTGTTGGTGATTTGACATAATCATAATGGTGATTTGAAATAATGGACTGAAAGCACAAATAAAGTCAATCACACACAGTGCTaccatttcatttcatcctATCATTCGATTGTCATTGACATGCCTGTCATAACTTTTCGAGGCTTGATATATCAGCACCTTTCAGTCAACATTTGAGCATGCAGTTATCTCACATAACTGAATCCTAAATGCTAATCTACTtcccatttaaaataattgcagTTATTAAATCCATTATCCAAAAATGACATTGTGTATTTGTTAAATGATGTATGAAGAGTGGAACCTCAGTTATTAGGTAATGCACTGTTTGTAGATTACTCTAAATGTTGTTACAGTGTAAATATTTGAGttttacttttgtgtttttacatgttttttagtacgttttcatttttcagtctCACTGATCAgattttaaaggaatactccttTAACCAAATCTCCATTAACTGcatatatatagtgtatgtgtgattgatTACCAAGGACAATAGTTGTTTACAATGTTTCCTTGTactgaaaaacagaacagaaaacctcacttataatggaagtgtAAGGGcaattttttcaaataaaaaaaaaaaaaaaaaacaactatactGGATATCGAAGTTCAAACCATGACACTGTACAGGTCTGAGGAGATAGATGTATGAAAATCTTACAAAAACTATTTATATGGCTTTTTCATACAGCGTTCCAACAGTGCTGCAAAAAACACGCCTGGTCACTTCCACTTTCTCAGAGTTTCTCTGGTATCCATGTGATTAGGCTGAAACTGGCCATGGGCCTTGTTTTGTCAAGCCGgatatgaattaatttatttgtaaatatatgtgGTATTTATAAAAAATCCAGTTTCAATCCTACGAGAGCTCTTGACTTTATGTAAATTTGCATATAAGGAGAATGTGTACCTTGACTGATCAGTGTCAAATTGTATGTGGCACGGAATTAATGAACGTTATGTGAAACTCAGTTGTAAATGACTTGAAAGGAAGCGATCCACAACAAATCGGTGCTTATGGTAGCTCAcatgctgcagtggctgagctgtaTTCTCTATTGATGTGTgttgagtcaaaataacttccacttctgcatCTTAGAaacttcttttctttcactgaTTAGTTGCCGTTTTggtgttttcagctctctgtgatctttttgccttttatggagtgtTGTGGGCGTTACTAAAGGTAAATCGGCTCTGTAAATGTGATTGTTTTTGTGGGTGATTGTATGCGTGTCTAAATCAGCTTCACTGGCACTTCTGACAGATTTTAGTCCTATGAACTTTACTAAACATTTActaaattattaataactaaAGCCTTATAACAACcaaatttttctgtaaaaagttGAATTCTACATTTAATTGatgaaaatattattcaaatacAAAACCTTTGCAAAACCTGTCCTTAGACCttcattataagtgagttttatGCAACAgattttctgctcttttctcagtggggtttttttttttttttttttttacactttggTAATTTGTACGCATTTACAACATATGCAGTAGATAAAGATTAGGTTAGAAAAAGTATTTCTTTAAATCTTAAAAACGCAGTGTGTTCTGTAGCATGCCTCGCAGCATGTCTTCCTGGACAAACCTCTGATTTACTGGTCATAAATGTACTTGGTTAAGAAAGGGCTTTGTTTGTGTGGTGGTGTACATCAGTATCTGAAATGTGTCACATGATCTGAAAATCACTTAAGCACGTGTCATAAAAACGACCGTAATTTTCCACTGTTAACATATTTACTGTGCATGAGAAGAAGTACATCGTAATATCCCCTACAGTAGTCCATGTTAATGAGCTGGACTGTAGAACACAAGACTTTAACATGATGTACCAACATGTGTACAACAGCTGATCTCAGCTGCCAATGTGAATAAATATACCTCTGAATCAAC

Function

symbol description
armc6 Orthologous to human ARMC6 (armadillo repeat containing 6).

NR:

description
armadillo repeat-containing protein 6

GO: NA

KEGG:

id description
K24166 ARMC6; armadillo repeat-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925001.2 True 3660 mRNA 0.42 8 15659976 15666070

Neighbor

gene id symbol gene type direction distance location
LOC113533414 btbd2,LOC105905850,LOC108427161,LOC103376164 coding upstream 1300 15650621 ~ 15658676 (+)
LOC113533252 mex3d,mex3b,LOC107736985 coding upstream 73693 15580021 ~ 15586283 (+)
mbd3a mbd3,LOC108427158,LOC105938962,LOC107713415,LOC107393299,LOC101480296,LOC106515020 coding upstream 81898 15571964 ~ 15578078 (+)
tcf3a LOC100304646 coding upstream 96191 15534922 ~ 15563785 (+)
map2k2b mp2k2,map2k2b,LOC108427153,LOC105905870 coding upstream 138755 15514412 ~ 15521221 (+)
LOC113533481 LOC108280200,LOC107723211,LOC107748524,LOC102294424,LOC102791396,LOC101468755,LOC100704480,LOC102200990 coding downstream 132121 15798191 ~ 15842389 (+)
sbno2a sbno2 coding downstream 197077 15863147 ~ 15890456 (+)
arhgap45a LOC108280537,LOC108427168 coding downstream 227931 15894001 ~ 15923289 (+)
pip5k1cb LOC108280566,LOC108427169 coding downstream 272825 15938895 ~ 15984585 (+)
rab11bb LOC108280567,LOC108427173,LOC100692846,LOC105903927,LOC107660390,LOC105900968,LOC107552705 coding downstream 326150 15992220 ~ 15999440 (+)
G320992 NA non-coding upstream 42853 15616911 ~ 15617123 (+)
G320991 LOC108280289,LOC106912954,LOC106923029,LOC102789877,LOC101482480 non-coding upstream 43758 15615997 ~ 15616218 (+)
G320988 NA non-coding upstream 46435 15613194 ~ 15613541 (+)
G320981 NA non-coding upstream 63750 15596024 ~ 15596226 (+)
G320977 NA non-coding upstream 88887 15570694 ~ 15571089 (+)
LOC117600003 NA non-coding downstream 17001 15683071 ~ 15704584 (+)
G321203 NA non-coding downstream 356416 16022486 ~ 16023068 (+)
G321214 NA non-coding downstream 375724 16041794 ~ 16043738 (+)
G321217 NA non-coding downstream 380076 16046146 ~ 16046482 (+)
G321220 NA non-coding downstream 383024 16049094 ~ 16049308 (+)
LOC113533167 NA other upstream 89498 15566554 ~ 15570478 (+)
si:dkeyp-68b7.7 LOC108280928 other upstream 356688 15299061 ~ 15303288 (+)
fcer1gl LOC100304589 other upstream 406421 15249515 ~ 15253555 (+)
LOC113533365 LOC108280254 other upstream 558515 15082238 ~ 15101461 (+)
LOC113533366 NA other upstream 593605 15063721 ~ 15066371 (+)
G321088 NA other downstream 202946 15869016 ~ 15870995 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other downstream 263877 15929947 ~ 15936773 (+)
jund jund,LOC108280549 other downstream 434463 16100533 ~ 16111089 (+)
si:ch211-178n15.1 LOC108280694 other downstream 445965 16112035 ~ 16120033 (+)
G321257 LOC108280695 other downstream 465265 16131335 ~ 16132364 (+)

Expression


Co-expression Network