ccl20a.4


Basic Information

Item Value
gene id ccl20a.4
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10532984 ~ 10534451 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925002.2
TTGTTTTACTCATGACGTtggtgctgttgtgtgtgtctctgggaGAAACCAGCGCAGTGAGATGCTGTGTGAATTTCTCACCAAACCCTTTGCCTCTCAATCGTCTGAAAGACTTCACCATACAGGATGCAACTACTGTCTGTCGACTGcatgctgtgatATTTACcacagtgaaagaaagaaagatttgtGCTGATCCTGATTCAACATGGGTTAAAAATGCTGTGAATTACATTAGTAAGTTCATCATTATACTGATGTATAAAAGCATTTCCCAGTTGAGGAAACAAAGGAAAACTTGCATCACAAATAGGATGAAGAATGAGAAATGAGGAAATaggatgagaaaaaaatgaatctcatggctgatgtcctttcttcttggcatgatgtagacacacaactgagtgctccagaacaccaaactgccacaAGTTGtacttttatagaggtagtcacacttcttgaggATTAAcaaatcttgtgcatttcattagtaacaggTTAATTACTCTCTAAATTATTgttggaagtaggaagggtgtacttattttttacccacctggtttctgaatgttgtttacatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925002.2 True 587 mRNA 0.38 4 10532984 10534451

Neighbor

gene id symbol gene type direction distance location
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding upstream 185596 10291830 ~ 10347388 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding upstream 244760 10196108 ~ 10288224 (+)
trnar-ucu_12 NA coding upstream 345160 10187751 ~ 10187824 (+)
sdhc sdhc coding upstream 346917 10173820 ~ 10186067 (+)
atp1a2a atp1a2a,LOC108261056,LOC108428278,LOC107692876,LOC107749099,LOC107721700 coding upstream 402262 10061226 ~ 10130722 (+)
vwa5b2 LOC108280745 coding downstream 120958 10655409 ~ 10704492 (+)
mul1a LOC108280869 coding downstream 177257 10711708 ~ 10719149 (+)
ncapd2 ncapd2,LOC107692903,LOC107659972,LOC107749205,LOC107557881 coding downstream 304304 10838755 ~ 10860296 (+)
acsm3 acsm3,LOC108428295,LOC107749205,LOC107682913,LOC107735424 coding downstream 327508 10861959 ~ 10878656 (+)
map6d1 LOC108280841 coding downstream 345790 10880241 ~ 10897751 (+)
G317946 NA non-coding upstream 8210 10524486 ~ 10524774 (+)
LOC117599937 NA non-coding upstream 12776 10517588 ~ 10520208 (+)
G317939 NA non-coding upstream 22791 10504163 ~ 10510193 (+)
G317761 NA non-coding upstream 345858 10186306 ~ 10187126 (+)
G317754 NA non-coding upstream 375454 10157277 ~ 10157530 (+)
G317963 NA non-coding downstream 40363 10574814 ~ 10575152 (+)
G317964 NA non-coding downstream 40862 10575313 ~ 10575547 (+)
G317967 NA non-coding downstream 47642 10582093 ~ 10582292 (+)
G318016 NA non-coding downstream 113470 10647921 ~ 10648193 (+)
G318031 alg3,LOC107692886,LOC107730451,LOC107557882 non-coding downstream 172363 10706814 ~ 10707508 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 555068 9958993 ~ 9977916 (+)
G317390 NA other upstream 1117820 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1719574 8811595 ~ 8813410 (+)
G316745 NA other upstream 2263786 8268709 ~ 8269198 (+)
G316744 NA other upstream 2268923 8263339 ~ 8264061 (+)
capn10 capn10 other downstream 1980 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 29370 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 195895 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 865433 11399884 ~ 11464769 (+)
G318439 NA other downstream 932848 11467299 ~ 11469499 (+)

Expression


Co-expression Network