LOC113533139 (nop9)


Basic Information

Item Value
gene id LOC113533139
gene name nop9
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16665629 ~ 16678051 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925043.2
GTTTAGTCCTGTAATGACGTTTAGCTTCGGCGTCGCTAGCTACGTGTCGTCATCACCCTGCGACAACGTTTTCTCCACTGACCATGTGAGATGAGCCTCGCAGGGatacaaaacattcagATACAGAGAACTAGAGGAAACTTGAAGTGTGACTGAATGCTGAGCACATTTTGTTTGCTTACTGTGATACACTGATAAGAGAGAGATGGTGGAGAAGATGGGAGCAAAAGATCAGAAGCATTTTGGTGAACAAGGGCAGAAGAGGATGAAAAAGAAGCCTGATCAGAgtaaaggaggaggaggaaacaGCAGCCGTGGTGAGGAAGGAGGGAAGAGGAAGCGTCTGGATGCGATGACTGTGGGCTATTTTCGTCGTGTGAGTGAGAGACTGAGCGAAGGATTCACAGACGATGAGGAGCGAGCTCTCTTTGTTGAAAACGTTCTCTCAGAGGTGAAGGGACAAGCTGGCCTCGTCACCACGGATATGACGGGCAGTCTGGCTCTCCAGAAGCTTCTGTCATTGGCCAGCCTCGAACAGGTGGCAGAGGTCCTGGCTGAACTGGGTGGAGAAACGGGATCAGAGTTTAAAACTGTGTCATGTGACAGATGTGGGGGTCATGTGATAGAAAGTGCCATCAAACAGATGGCCAAGTGGACAGAGGACATCCACTCTGAAGAGAAGAGCAGCTCTGGAAATGAACAAGAAGAACCAGAGGCCGAGAACTGCGGGATGCTCGAGGATCAGGTGCTAACTCTGTGCCGAGTGGTGAGAGAGAATATCGTAGACTTCATCAAAGACCCTCACGGATCTCATGTGCTTCGAACGCTTATACACGTGCTCGCGGGATGTTCGGCACAAGAGCAGTCTGGTGCACATCCAGcTAAAAAGCAGAAGAAAGCGGAACCTGAGCTGACAGACTTTGAAGCACCAGCATCATTCTGGTGGGAGCTCAAGTACCTTTCAGAGTCTATGATGGAAAATGTTAATGTCTGTGCCACCAATCCCACTGCCAGCGCCGTGCTCCAGACCCTACTGACCATCTGCCACAGGAAGAGACCCATTCTAgttaaaaaactaaacaagGGCATCATGGAATACCTAACATCTCTGAGCTCAGCTCCTGGAGTCAGCCCCCTCTTGGTGTTTCTGAAGGACCAGTCATGCAGTCGGCTCATCCAGACAGTGTTCCAGTTCTCCCATAAAGTTTTGCTTCGAGACACCTACAAGAACCACCTGAAGAACCAGCTCATGCCTCTGGCGCTTCATCCGTTTGCGAACTACACCATCCAGTCCTTTATAGCAGCCTCGGTCAATTACAAAGTGTTTCTGAAGGTGTTTGACGAGTTGGCGCCTGGGTTCGAGGCGATCCTGGCGGCGGGTCACATGGGGGTCATAGTGCAGCTGGTGGAGAGCTGCGTGCACAGAGAGGAGAGGCAGGGTGACATGCTGCAGCGCCTCCTAGAGGCTTTTCACTGCAGTGAGCCCTCCACAAGGCACCtctcctgtctccctctcttcctgtcCTTACTGACATATGAGGTGTACTATAACACAGAGGCAGCAGAGGGCGACGCTGTtcctcagCGCCCTCTCTCGATCTGCTACCACGGCTCGCGCCTGGTCCAAGCACTGGCCCGCTTTAAAGACCGCTCCATCCTGATGAACAGCCTGCACAGCCTGAGCAGAGAAGAGCTGCTGCGCCTGGGCACGGAGCAGACGGGCAGCCATGCCCTCCAGGCCCTCGTCACGCTCTCCAGTGACAAAGGCAAGGGAAAGATCCTGAGGAAGCTTGAGGGACTCTATACTCAGCTGGCCTGCTCCAAATACGGCAGTCGTCTGCTGGAGGCCGTGTGGAGCAGCGCCACCATCAGTCAGAGGCAGAGCATAGCAGAGCAGCTGGTCCCCAGTGAGGCTCAGCTGCGCTCGGATCAGTTTGCACGCCACGTCTGGGCGAAATTTGGCCTCACACACTTCCAGAAGAGACGCGGTGCCTGGATGGAGCTTCAGACGGGACAATCGAAGAAGAGAAAGATGTTCAGTGACATTCTGGAGTAACTTCTTTGAactgCATTTATGGTGCTGATGGTGGAGGTGTCATGAGTGATGAATATCTCACAACCAGAAAACGAGTGAAAGAAGGAGAGCAAGAGTGAGCAGAGTGCAGCTGTGACTTCTCCtgcactctgtctttctcactatCTGAGTGGGAGAGAAGGGAGAAGACTGCGAGCCTGATCACAGGGGCGATGTGACATTCAGCTGCGAGAATCCCCTGACCGAGTCAACACCAGCCTGATAGAACGCTTCACACGAGAGCCTGGGAACGTCAAACAACTCTCACTAACGGCCATTAACGTCAGCCGGTGTGCAAATGAGTTAAATTAAAAGGCCACTGTGGTTTTGTCTAGAGCTCCTTTACATCACTCATCTGCAGAGGTGTAGGAGATTCAGTGTGGTCCATTAAAGAACAATAAGAGTTTTATGTAGTGGTGCGAAACAGTCGTGCACCGATTAGAGGCGAGATTTCTTCTGGCtgggttattattattgatagcATTTCTTGCATATAATTTCTCACAAATTGCTTTGTGAAATTACTTTTTGATTCTTTTTCACCATGCAAGTGTTCTCACCTATAATAAAGTATTCAATTATAGCCTGAGAGTgaacaatgaataaatgaggGATTTGACAGAacacttgtttaatttttgtcctTAGTCGCCAATAGTGggtaaat

Function

symbol description
nop9 Enables RNA binding activity. Predicted to be involved in ribosome biogenesis. Predicted to be part of 90S preribosome and preribosome, small subunit precursor. Predicted to be active in nucleolus.

GO: NA

KEGG:

id description
K14790 NOP9; nucleolar protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925043.2 True 2741 mRNA 0.50 13 16665629 16678051

Neighbor

gene id symbol gene type direction distance location
foxl2b foxl2,LOC108280919,LOC101448029 coding downstream 27347 16636120 ~ 16638282 (-)
LOC113533663 NA coding downstream 45895 16619633 ~ 16619734 (-)
LOC113533630 pnp5a,LOC108280898,LOC108427136,LOC107692836,LOC107747996,LOC107569603,LOC107728028,LOC108440276,LOC107703870 coding downstream 54651 16605398 ~ 16610978 (-)
LOC113533174 LOC108280837 coding downstream 64035 16594144 ~ 16601594 (-)
LOC113533290 midn,LOC108271022 coding downstream 139046 16509561 ~ 16526583 (-)
abhd4 abhd4,LOC108280801,LOC107655861 coding upstream 29165 16707216 ~ 16714338 (-)
lrrc24 lrrc24 coding upstream 209055 16887106 ~ 16912991 (-)
eef1da eef1da,LOC108280684,LOC107663523,LOC108410862,LOC107757829,LOC107655868,LOC107600209 coding upstream 279469 16957520 ~ 16971858 (-)
adcyap1r1a adcyap1r1a,LOC108433074,LOC107600211,LOC107663529,LOC108280208,LOC107713631,LOC107655870 coding upstream 315845 16993896 ~ 17026779 (-)
fyco1b LOC108280757,LOC108433075 coding upstream 371093 17049144 ~ 17067577 (-)
G321536 NA non-coding downstream 56072 16608816 ~ 16609557 (-)
LOC113533305 NA non-coding downstream 118128 16546239 ~ 16547501 (-)
G321505 NA non-coding downstream 145259 16518388 ~ 16520370 (-)
G321470 NA non-coding downstream 264102 16399300 ~ 16401527 (-)
LOC117595731 NA non-coding downstream 270090 16394753 ~ 16395539 (-)
G321652 NA non-coding upstream 64855 16742906 ~ 16744015 (-)
G321998 NA non-coding upstream 681737 17359788 ~ 17389919 (-)
G322072 fuz non-coding upstream 802391 17480442 ~ 17481385 (-)
G322251 yme1l1b,yme1l1,LOC108430171,LOC107681681 non-coding upstream 1171101 17849152 ~ 17850372 (-)
G322250 NA non-coding upstream 1174582 17852633 ~ 17853837 (-)
stk11 stk11 other downstream 77813 16564708 ~ 16587816 (-)
G321462 NA other downstream 298625 16357574 ~ 16367004 (-)
LOC113533563 NA other downstream 941273 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 1434049 15222778 ~ 15231580 (-)
theg NA other downstream 1920142 14731734 ~ 14745487 (-)
trnal-uaa_3 NA other upstream 295476 16973527 ~ 16973770 (-)
G322080 NA other upstream 822014 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 1175796 17853847 ~ 17872108 (-)
G322538 NA other upstream 1716198 18394249 ~ 18394823 (-)
G322826 NA other upstream 2075721 18753772 ~ 18755593 (-)

Expression


Co-expression Network