LOC113533174 (LOC108280837)


Basic Information

Item Value
gene id LOC113533174
gene name LOC108280837
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16594144 ~ 16601594 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925103.2
AGTAACTTGATTCTCTAGCAGAAAAACGAAACTTTTAAGAAGAGGGCTGTGAggactgtgagagagagaggaccaAGATTCTGTGTTGTGAGTAAATATTTTGTCTGTGATCAAAACATCCAGAGATGAGGCGTTCTCAGTTCAGGAACTCTACCAGTCTGCATGGAGCTTCCCAGTCCCCAGTAACTCAGCTGCGGTTGGTGCTGGTGGGCAGAACTGGTTCAGGTAAAAGTGCCACTGGAAACACCATCTTGGGTGAAGAATGTTTCCCATCTAAACTGAGCATGAACTCAGTGACAAAGCAATGCAAGAAGGCATGTGGAGTAGTTCATGGGCGGAGCCTAGCGCTGATTGACACTCCTGGCTGGTTCGACACCTCCCTCCAGCAAAATGAGATAGCACAGGAAGTGTCTAGATGTCTGACCATGTGTTCACCTGGACcacatgcatttctgctcaTCATACCACTCGCTCGCTTCacagaggagcagcagcagaCTGTAGATATGATTGAGGAGGCTTTCAAGAAGAACATGAGTGATCACACAATCATCATATTTACCCATGCAGACGAGCTGGAAGGAGAGCCCATTGAGCAGTTCATATCAAAACAGGGCCAGAAAATCCAGGATATTATTGCACGTTTCGGTGGGCGTTTCCTGGCTTTCAACAATGAGAACCCAGAGAACCAGGACCAGGTGAAACAGTTCCTGAAGAAGCTGGATGAGTTGCTGGAACAGAACGAGTACCGTCACTTCACCAACCAGAAAACGGAGCATCCAGAGATGAGGCGTTCTCAGTTCAGGAACTCTACCAGTCTGCATGGAGCTTCCCAGTCCCCAGTAACTCAGCTGCGGTTGGTGCTGGTGGGCAGAACTGGTTCAGGTAAAAGTGCCACTGGAAACACCATCTTGGGTGAAGAATGTTTCCCATCTAAACTGAGCATGAACTCAGTGACAAAGCAATGTAAGAAGGCATGTGGAGTAGTTCATGGGCGGAGCCTAGCGCTGATTGACACTCCTGGCTGGTTCGACACCTCCCTCCAGCCAAGTGAGATAACGGAGGAAGTGCTAAGATGTCTGACGATGTGTTCACCTGGACcacatgcatttctgctcaTCATACCACTCGCTCGCTTCacagaggagcagcagcagaCTGTAGATATGATTGAGAAGGCTTTCGAGGAAAACATGAGTGATCACACAATCATCATATTTACCCGTGCAGACAAGCTGAAAGGAAAGCCCATTGAGCAGTTCATATCAGAACAGGGCCAGAAAATCCAGGATATTATTGCACGTTTCGGTGGGCGTTTCCTGGCTTTCAACAACAAGAACCCAGAGAACCAGGACCAGGTGAAACAGCTCCTGAAGAAGCTGGATGAGTTGCTGGAACAGAACGAGTACCGTCACTTCACCAACCAGAAAACGGAGGTTGTAGAGAAGGCACTAGCAATGTTGGAAcagaaaaagcaagaaaaactAGCTGAATCAATTAAGAAGGCCAAGCAGGAAGTAAGGCAGATGGCTGAACATCGCAAGGCTGACATCATTAAAAACCTGGAGGAGGAGAAGCAAGAGATAGAAAGATGCAGGAGTCACATCAAGGTTGAAATCCTCCATTTAACAGCAgaaattaacaaagaaaatgaaaacctTTATAAAGATCCACACAGGCTGCAGTTGCTGCAGGGATCTCTACAGGGTGCAAAAAACAGCCTCAGAAGGctagaggaagagaaggagttAAGGATAAAGGAaagtgcaaaaaagaaaaaagaattagaAATATGGATCAAGGaagaagaacagagaagagagcaagaggagagagaaaaggcttCAAATGAGGATGAAAGCAAATGGtattacaatgaaaaatatttcactatTCTGAAGTACCTCATCATTTTTTTGGGAGGTGCTGGAGCTGGATTTGCGCTGGCACCTGCACTTTTTATGACCGCTGCAGCACCTGTAGGACTGGCAGCAGAGTTAACCGCACTGCTCGGACCAGAGCTTGCAGCCATCGTGATGGCAGCAGCTACAAAAGCAGCTCCTTTAATGGGTGCAGCAACAAAGGTAGCTCCATTGGTGACTGGCCTTTGTTCCATTCAATAACACAAAAGCCAAAACATATGTCTGTAAGTTTGGAGAAATCTATAATGTTGTCATCCTCTAGTCCAAGGGTGTAAAACAGGCACAGAAAATGAATGTAGAATCCGTGTTCTAATTTATTACTGTGTGGTGAACCATAATTGAATTAAAAGATAAGAAAAAAGAGCTAGTATCTGTTTTTCTACTAGAGAGCAAAATAGACCAATAAATTGATCCGTAATTCTCCATTAGAAAGCTACGAATTTTACATATAATCCTAACTGGGTCCATTTCCTAATTAAGTCCATGTATTAGTCCAGTATAATCctaattaaatccatttcagttccagtttGTAGCGCTACAAAATTTGGAAAGGTTCAAGGGGGttaacatttatgcaaaacacTGTATGGTAAAACCATAATTTAGAAATGAACATGCTAATGGTAATgaattgttcatttgttttgttggtgATACAGTGTATATTCAATCTGGCCCACTTGACATTGGACTAAGTGTCATGTGGCCTGTTACCTAAAAAGTGATTAACACCCCTGTTCTAGTCTGTCTGATGATATCAGATGTTTGTAGTGTGTAGGAAGAATAAGAAAAggaacatttttattacaatcataatctgttttattattcattttgcatATACTAATCGCAGTCATTGTACTGCTTGCATTCTTCGCTACTTAGTGTAAAGCAGCTCTGTCTTTGGGCTTTCCTTTGATGcattaattacaaaatattttactgcttacagaaaaaaacaatatattaacTAGAACTGTAATTCGAAATACTTTTATGTTAATATACTACTAGTATGTACACATTCAATTAATCAGATACATAAGTGTGTTTCCATGTAACAAAGTGTGgggttcatagatattattgcAATGATAATGTAtcctataaaataaaacaaatttgagatttttcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925103.2 True 3061 mRNA 0.42 3 16594144 16601594

Neighbor

gene id symbol gene type direction distance location
LOC113533290 midn,LOC108271022 coding downstream 67561 16509561 ~ 16526583 (-)
cirbpa cirbpa,LOC108280649,LOC107655466,LOC107574409,LOC107729620,LOC107665639,LOC107712399 coding downstream 120456 16470099 ~ 16473688 (-)
cib3 cib3,LOC107687907 coding downstream 201864 16385427 ~ 16392280 (-)
LOC113533484 LOC108280930,LOC108427189 coding downstream 251307 16336003 ~ 16342837 (-)
ap1m1 ap1m1,LOC107696211 coding downstream 267187 16308558 ~ 16326957 (-)
LOC113533630 pnp5a,LOC108280898,LOC108427136,LOC107692836,LOC107747996,LOC107569603,LOC107728028,LOC108440276,LOC107703870 coding upstream 3804 16605398 ~ 16610978 (-)
LOC113533663 NA coding upstream 18039 16619633 ~ 16619734 (-)
foxl2b foxl2,LOC108280919,LOC101448029 coding upstream 34526 16636120 ~ 16638282 (-)
LOC113533139 nop9 coding upstream 64035 16665629 ~ 16678051 (-)
abhd4 abhd4,LOC108280801,LOC107655861 coding upstream 105622 16707216 ~ 16714338 (-)
LOC113533305 NA non-coding downstream 46643 16546239 ~ 16547501 (-)
G321505 NA non-coding downstream 73774 16518388 ~ 16520370 (-)
G321468 NA non-coding downstream 138021 16394208 ~ 16456123 (-)
G321470 NA non-coding downstream 192617 16399300 ~ 16401527 (-)
LOC117595731 NA non-coding downstream 198605 16394753 ~ 16395539 (-)
G321536 NA non-coding upstream 7222 16608816 ~ 16609557 (-)
G321652 NA non-coding upstream 141312 16742906 ~ 16744015 (-)
G321998 NA non-coding upstream 758194 17359788 ~ 17389919 (-)
G322072 fuz non-coding upstream 878848 17480442 ~ 17481385 (-)
G322251 yme1l1b,yme1l1,LOC108430171,LOC107681681 non-coding upstream 1247558 17849152 ~ 17850372 (-)
stk11 stk11 other downstream 6328 16564708 ~ 16587816 (-)
G321462 NA other downstream 227140 16357574 ~ 16367004 (-)
LOC113533563 NA other downstream 869788 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 1362564 15222778 ~ 15231580 (-)
theg NA other downstream 1848657 14731734 ~ 14745487 (-)
trnal-uaa_3 NA other upstream 371933 16973527 ~ 16973770 (-)
G322080 NA other upstream 898471 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 1252253 17853847 ~ 17872108 (-)
G322538 NA other upstream 1792655 18394249 ~ 18394823 (-)
G322826 NA other upstream 2152178 18753772 ~ 18755593 (-)

Expression


Co-expression Network