foxl2b (foxl2,LOC108280919,LOC101448029)


Basic Information

Item Value
gene id foxl2b
gene name foxl2,LOC108280919,LOC101448029
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16636120 ~ 16638282 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925105.2
gtgacgAAAGCGGAACCCAGAGCATCGTCAGAGCGCACGTCTGTGGGCGAATAGGATGCGCCAAACGCAGAAGAAAGCGCCGTGTGAGCTTTTAGAGGAAACAAGCGGCAGAAGTGCGCGGCGCAATTTGGAGTTTGAGGACACGGAGTTGTGAGAGGCGCGTATACATCTCGGGAGACGTTCTTACCTTTTCCATGGCGCTTCAGTAGTTCAGGCCGTTAAAAAGGCATGCAAAGAAGAGGACATAATTCCTAAATTACCAGGAGCGATGGCATCTTACCACGGCTTAGAGGGTGACGCAATGGCCCTGATGGTGCACGACACCAACGCGGTGAAGACGGAGGAGTTCGTGAAGGACGAGCCGGTCCGGACCGAGCCGAGCTCGGAGAAAGCGGACCCGTCCCAGAAGCCGCCGTACTCCTACGTGGCCCTCATCGCCATGGCCATACGCGAGAGCTCGGAGAAGCGCCTGACCCTGTCAGGCATCTACCAGTACATCATCAACAAGTTCCCCTTTTACGAGAAGAACAAGAAGGGCTGGCAGAACAGCATCCGCCACAACCTGAGCCTGAACGAGTGCTTCATCAAAGTGCCGCGCGAAGGTGGCGGCGAGCGCAAGGGGAATTACTGGACTCTGGACCCGGCGTGCGAGGACATGTTTGAGAAGGGGAATTACCGGCGCCGGCGGCGGATGAAGCGGCCGTTCAGGCCTCCAGCGGCCCACTTCCAGCCCGGCAAGTCTCTGTTCGGCGCAGACGGCTACGGTTACCTGTCGCCTCCCAAGTACATCCAACCGAGCTTCATGAACAACGCCTGGCCGCTCGCtcagcctcctcctcctcctcctccgccgcCCATGTCGTCGTACGCGTCGTGTCAGATGCCGAGCAGCGACGTGAGCGCCATCAACGTGAAAGGCCTTTCCACCGCGTCCTACAACTCATACTCCCGCATGCAGGCCATGGGCTTTCCGAGCGTCATGAACTCGTATAACGGCGTGAGTCATCACCAGCACCAGGCGCAGCAGCTAAGCGGAGCGGCGTCCGCGCCTTCACCCGTACCAGGCAACAGCGCGGCGGGCCTCCAGTTCGCCTGCGCCGCGCGTCAGCCCACCGACCTCTACTCGTACTGGGACCACGAAGCCAAGCATTCAGCCTTGCACTCTCGGATTGACATTTAGGCGGAAACGAGAGCCACAAAACTGGAAACTGCTTGACGACTCAGTGTTGTGAACGTTTTCTAAACCGCCTGGGAGGTctcttttacatttctttccCTCTCGAGACTTACACGGAATAGAAACAGGGTAGCTCTgaagaaagcaaaaaatatCCCCTGGGTTGGATTAAGCCTTTGTAGAGCTTCAgttgatagatagatacacacagATGTTCCTTTATCACAATGCGtattaattcaacactgaaAAATTGGCTCTGAAGTGCAGATCTCGCTTAGAAGGATCGCGCGTGCACACTTAGATTTCCAGTGTCAAATTAGCTTTTACAGCACAGAATAAACTCGTGCAGTCTTGAATTTACACCAGCAAAGATGAATGAACTTTCACAGTGCCTGTCTGTGTCCAGATGTCCTGATCTTAGCACAGACAGTGCACAACGCCGGGGCTTTTGCTGCGCAGCAGCTTGGATGGTTTTTAGTTTTGGGCTGATGAAGCCTACAGAGCGCACATgcaaatataaaatctaaacaaCTCTAACTACAGCCGATAGGTCAGTGTGTAAAAGAAGAGCTCGGACTGTGTAAATTCAACTTCAtccagtgtttttaaaatgaagctgAGTGTGTTTATATGATTCTTGTGAGCCCGAAAGTAGCCCCAGTCTGTTGTTTACTCCATGCAGTGTAGATTAGCCCTCTAGCATACTGACATCCTAGCTTTTTAGATCATTGTAAAataatctgtatttttaaaaatcaccagACCAGACCTCTTTTCGTTGATATTTTTTTGATACTCTATTGAAATATTGACATTGTTGGGACCATGTTAAATCGGcacttattttaaataaaatactttggtgAAATA

Function

symbol description
foxl2 Enables cysteine-type endopeptidase regulator activity involved in apoptotic process; sequence-specific double-stranded DNA binding activity; and ubiquitin conjugating enzyme binding activity. Involved in several processes, including apoptotic DNA fragmentation; extraocular skeletal muscle development; and positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. Located in Flemming body and nucleoplasm. Implicated in blepharophimosis, ptosis, and epicanthus inversus syndrome and primary ovarian insufficiency 3.

NR:

description
PREDICTED: forkhead box protein L2-like

GO: NA

KEGG:

id description
K09405 FOXL; forkhead box protein L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925105.2 True 2050 mRNA 0.51 2 16636120 16638282

Neighbor

gene id symbol gene type direction distance location
LOC113533663 NA coding downstream 16386 16619633 ~ 16619734 (-)
LOC113533630 pnp5a,LOC108280898,LOC108427136,LOC107692836,LOC107747996,LOC107569603,LOC107728028,LOC108440276,LOC107703870 coding downstream 25142 16605398 ~ 16610978 (-)
LOC113533174 LOC108280837 coding downstream 34526 16594144 ~ 16601594 (-)
LOC113533290 midn,LOC108271022 coding downstream 109537 16509561 ~ 16526583 (-)
cirbpa cirbpa,LOC108280649,LOC107655466,LOC107574409,LOC107729620,LOC107665639,LOC107712399 coding downstream 162432 16470099 ~ 16473688 (-)
LOC113533139 nop9 coding upstream 27347 16665629 ~ 16678051 (-)
abhd4 abhd4,LOC108280801,LOC107655861 coding upstream 68934 16707216 ~ 16714338 (-)
lrrc24 lrrc24 coding upstream 248824 16887106 ~ 16912991 (-)
eef1da eef1da,LOC108280684,LOC107663523,LOC108410862,LOC107757829,LOC107655868,LOC107600209 coding upstream 319238 16957520 ~ 16971858 (-)
adcyap1r1a adcyap1r1a,LOC108433074,LOC107600211,LOC107663529,LOC108280208,LOC107713631,LOC107655870 coding upstream 355614 16993896 ~ 17026779 (-)
G321536 NA non-coding downstream 26563 16608816 ~ 16609557 (-)
LOC113533305 NA non-coding downstream 88619 16546239 ~ 16547501 (-)
G321505 NA non-coding downstream 115750 16518388 ~ 16520370 (-)
G321470 NA non-coding downstream 234593 16399300 ~ 16401527 (-)
LOC117595731 NA non-coding downstream 240581 16394753 ~ 16395539 (-)
G321652 NA non-coding upstream 104624 16742906 ~ 16744015 (-)
G321998 NA non-coding upstream 721506 17359788 ~ 17389919 (-)
G322072 fuz non-coding upstream 842160 17480442 ~ 17481385 (-)
G322251 yme1l1b,yme1l1,LOC108430171,LOC107681681 non-coding upstream 1210870 17849152 ~ 17850372 (-)
G322250 NA non-coding upstream 1214351 17852633 ~ 17853837 (-)
stk11 stk11 other downstream 48304 16564708 ~ 16587816 (-)
G321462 NA other downstream 269116 16357574 ~ 16367004 (-)
LOC113533563 NA other downstream 911764 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 1404540 15222778 ~ 15231580 (-)
theg NA other downstream 1890633 14731734 ~ 14745487 (-)
trnal-uaa_3 NA other upstream 335245 16973527 ~ 16973770 (-)
G322080 NA other upstream 861783 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 1215565 17853847 ~ 17872108 (-)
G322538 NA other upstream 1755967 18394249 ~ 18394823 (-)
G322826 NA other upstream 2115490 18753772 ~ 18755593 (-)

Expression


Co-expression Network