zgc:85843 (tm6sf2)



Basic Information


Item Value
gene id zgc:85843
gene name tm6sf2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15854503 ~ 15861482 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026925125.2
AAGACACAgctgcatttcacctcctgataCTGCCTTTAGGAACAGTCTgcatgaatttcttttttttttttttaaatatttccctttatctctcactctcacttaatttcacttaatttttattcttCTACTGGAGAGAAGATGGCTTTTCCAAAGGAGCtccttacttttattttatctctGACAGCACCGCTTGTACTTTATACAGCAAACAACATTTCTGCTTTGCAAAAgCCACTGGTTATACTGGGATTTGAAGTAGCTATTCTTGCTGCAGTTTTCATCGTGGCATATCTGTGTGTTCGAAAAGAAAAATCTGTGGACTTCCTGTTTTATGTATTCGTTGTGTTTTCTTTCACCTCCATCGCTGACCTTACGTGTGCTCTTGAGCTGGATGGATGTATCAAAGGCTTCATTGATTTCTACATTAACAAGGGTGAACCCTATTTGAACACGGCACATTGCATCATGAAGAACTACTGGAATGGAGGGGTGCACTTTGTTTTGCTCCTCGCCATCATCCACCGCATGTGGAAAGGGAAGCCATATCGGAGTTTGGCTCTTCTATGGGCCGGTTCCATGGTAGCCACTCAGATCGTCTTTATTCCAAGCATTGTCATAGGTAAACATGCTAAGAACATCTATCCAGCATTTTGGCTGAACCTCTTTTTCCTGATGCTGCTCTTATGGACAGCAGTGAAGCTTTTTAATAAGCCAAGAGAGCTGCCAATCATTCCAGCAGACAAGGTTGCAGCAGAACAGAAGAAAAGACTTCTGTCTCGCCCCAAAGACCTCTTGCTCACACTCACTGCGCTTGGAGCCATGGCCTTCACTGTGTTTAGAGGATTTGTTGTTCTTGAGTGCACACTGGACATGTGTTTCACCTACATTTACCAGTACGAGCCCTACATGAAGGACAGTGTGGCCTTCCCTAAGGTCATGATGTTGGTGTTCCTCTTCTATGCTTTGCCCTTGCTATCCCTGTTAGTCTACGGGCTGACTGTTCCGGGATGCACTTGGATGCTGGACTGGACTTTGTTCCTCGCAGGGGCCATAGCTCAGATGCAGTGGACGTACATCGGTGCATCCGTGCACTCACGGACACCCTTCACCTATCGCATCCCTAAAGAGGAGTGGAGGCTAGTCGTGACCCTCAACCTTGTGTATTTGGCTGTCCCTGTCCTGCTGGCTGCACGCTGCTACATAGATCCAGCCTTCTTCATGAAGCCGGTGCCTCCGGGACAAGCAGACAACGACAAAAAGCGCAAGTAGATGCATAAAACCCAAGCAAAGCAAAGGTCTTATGACCATACAAACTTTAACACATAGGTGAGACAGGAACTGAGACTCCTGATTGTGTCTGGAATCTGGAGCACCCAGTGGTGGACTTcacctcttctcctctcctgaaTGACCCTTGTCTCTGCTGTGTGGATTATAATCAGCTCCACTGTTCTAGAGCTTATCTCTGCTCGACGAATGAGTCATTTGATGCAATCCAGACTGCAACTCTGGACTCTGACACACACGTTTCTGCCAACACAACACTGACTGTAGAATTACTTCATACAGTGTCTCTTTGAGGCCTGATTTCAAAGTAATGTTTATCTGCAAAGGTATCTGCAAAGATCTGACAGTTAAATCCTCTGCTCCTAATGAGCCATTGTGATGTACAAGAAATGTGATTGTCTCTCAAAGTGTTTTGTTATCTGTAGACGGTTTTCTTTCTAATTATctttgttaggatttttttttatcactgttgcttgtttgtttttgttttggaggATTTTTGTCAACTAGCTTATTATGAGGATGAAACTGatctttaatattaaaaaaagaagaaacaaatgagaacatttttaaagaagCACACCAGCAGCTCTTATTGAGTGCATGTTCCCTGATATGAATCTGTAGTCTTGGGAAATGCACTGTTTATTATACTCATGGAGGGAGGCGCAGGTTGCAAAACATGCTGTAATATGTAAGAGGTTTTATTGATTAGATTTCCTTTGCGTGTATGCAAGCTCATTTTGCTCGTCCGGCCAAACCTTCTGCCTCTTGGCtctgtgctttataaatgaCATCATGCAAGCCGTAGAGTTTCAACAATCCTATACCTGGCCTAGTGAACTCTGACCCCACTGTTTCACAAAGATAACTAGGGAATGACTGAGGGGTTTTGTAAGAAAGTTGTTAATCAGAAACCGTTACAGGTCTCCGTTTGTGACCTTTGGCAGACATAGTGACTAACAAAGAAGTTTTGGTAACACTATATTTTATGGAACACATATAACCGCTTAATGACGGTcatgttatttgtttaatgaaaCTCAAATTGGACACTTGTAAAATGTTTGCTACATAACGAgacatttgttaaataaaaatgagtaatAATTGCTTTATTAGTTGCAATAATTCTCAGTAAACATTCATGAAAACCTTGTTATATAGATTATTATGCATGATTTAATAACCTTaataacagggttgccagggttggCCTAGTCAAAAAATACTCTGCAACTCTAAGtgtcttgttttatagcaaataatcagaattaaaaaaaaaaatctaatacatttctgcaaaaaGTGAAGACAgcgtgtctatgatgtacaaaACCAtgtctattgtaagatatattgcaaagattgtgagagggaaagggggattatggagtggttaatatcagaaatgcgtgcacacCACGGTGAGCCTGTTTTCCatgcaaagactgagaaaaagcgAAAAAAATTGTCCTTATTTTCCGGTGCCAGGATTTTTTGGGCtcgtttcaggtcttttgtatGGTTTTGttggctggaaattttgctgaaaccagGCAACATGAAATGACATTACCTCTTCTATGTGTGTCTTGCCCATGGCAATGGGGAACATGCCTGCTGTACTGAACACTTTGAAGAATGGTATGTCTAAAACCGCTCAAAACGAGCTGCTAGACCGTATcatggatgactgtatgttgtcaactctcaactgcctattacaggATTACTCTAAAAATGCACTAGATAGTAGACTATAGCATAACCAACTGTGATAGCTTCTTagcttaattttgtttgaggctatgttgttattaatgccGTCCTGCCCGaacaaaatctatggtcatgagccaCTGCTGCAATACATCTTGTTATGAATGAATACATAGTGAGTAACCCTTATACAAGCAACTAATCTGAGGTTTCTTAAGCAAAAAAACCCTCAACCTTAATTAACCTTTTACATGTGTTCCTTAAAATAGTgttactgatttgttttttgtttttttgtatgaatGGAAATTAAGAATTTTGTGTAATGCAATAATTAAACAAGTGTTGATTTCAAATTAAACATGTGCTAAGAAAGCCCTAA

Function


symbol description
tm6sf2 Acts upstream of or within lipid homeostasis and regulation of response to endoplasmic reticulum stress. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Is expressed in intestine; liver; and posterior intestine. Used to study fatty liver disease. Orthologous to several human genes including TM6SF2 (transmembrane 6 superfamily member 2).

NR:

description
transmembrane 6 superfamily member 2-like isoform X1

GO: NA

KEGG:

id description

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026925125.2 True 3400 mRNA 0.40 10 15854503 15861482

Neighbor


gene id symbol gene type direction distance location
LOC113533480 LOC108280289,LOC108427160,LOC107724981,LOC108239455,LOC106526424,LOC106923029 coding downstream 205759 15594435 ~ 15648744 (-)
onecut3b onecut3,LOC107724988,LOC107549809,LOC105906914,LOC107696512,LOC107552684,LOC105011560 coding downstream 365243 15463616 ~ 15489260 (-)
LOC113533539 LOC108280326 coding downstream 504997 15338737 ~ 15349506 (-)
plekhj1 plekhj1,LOC107696566,LOC107750216,LOC107671816 coding downstream 521842 15329012 ~ 15332661 (-)
LOC113533213 LOC108280248 coding downstream 547723 15304278 ~ 15306780 (-)
polr2ea polr2e,polr2eb,LOC107669821,LOC107599482 coding upstream 62739 15924221 ~ 15929067 (-)
LOC113533416 homer3,LOC108280570,LOC108427175,LOC107696283 coding upstream 180346 16041828 ~ 16068561 (-)
upf1 upf1,LOC107660376,LOC107724030,LOC105907049,LOC107696277 coding upstream 209624 16071106 ~ 16088518 (-)
pgpep1 pgpep1,LOC107596298,LOC107552686,LOC107660389,LOC107696873 coding upstream 229042 16090524 ~ 16094854 (-)
LOC113533206 loxl5b,LOC108280695,LOC108427108 coding upstream 267219 16128701 ~ 16131801 (-)
LOC117595737 NA non-coding downstream 27159 15811353 ~ 15827344 (-)
G321032 NA non-coding downstream 261887 15592160 ~ 15592616 (-)
G320897 NA non-coding downstream 394087 15380135 ~ 15460416 (-)
G320880 NA non-coding downstream 550478 15303811 ~ 15304025 (-)
G320871 NA non-coding downstream 567626 15286084 ~ 15286877 (-)
G321330 NA non-coding upstream 179399 16040881 ~ 16041741 (-)
G321347 NA non-coding upstream 187960 16049442 ~ 16049643 (-)
G321349 NA non-coding upstream 237386 16098868 ~ 16099238 (-)
G321354 calr3b,LOC107750920,LOC107696693,LOC108280796,LOC107552714 non-coding upstream 326494 16187976 ~ 16223314 (-)
G321465 NA non-coding upstream 513028 16374510 ~ 16375343 (-)
LOC113533563 NA other downstream 130147 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 622923 15222778 ~ 15231580 (-)
theg NA other downstream 1109016 14731734 ~ 14745487 (-)
LOC113533556 LOC108280202 other downstream 2174393 13665181 ~ 13680110 (-)
ccl25a NA other downstream 2238760 13612516 ~ 13615743 (-)
G321462 NA other upstream 496092 16357574 ~ 16367004 (-)
stk11 stk11 other upstream 703226 16564708 ~ 16587816 (-)
trnal-uaa_3 NA other upstream 1112045 16973527 ~ 16973770 (-)
G322080 NA other upstream 1638583 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 1992365 17853847 ~ 17872108 (-)

Expression



Co-expression Network